Browse Element(s) Details


Os.53233.1.S1_at

Description gb:AK071493.1
DB_XREF= gi:32981516
TID=Os.53233.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53233 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023097M11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023097M11, full insert sequence.
FL= gb:AK071493.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2821411/11Tesmin/TSO1-like CXC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g28170OsAffx.29393.1.S1_x_at11/118+17060489..17063020xanthine/uracil permease family protein, expressed
LOC_Os08g28170Os.14457.1.S1_at11/118+17060489..17063020xanthine/uracil permease family protein, expressed
LOC_Os08g28180Os.24203.1.A1_at11/118+17066467..17070235pentatricopeptide, putative, expressed
LOC_Os08g28190OsAffx.29394.1.S1_s_at11/118+17071842..17076528Actin-like protein 2, putative, expressed
LOC_Os08g28190OsAffx.29394.1.S1_at9/118+17071842..17076528Actin-like protein 2, putative, expressed
LOC_Os08g28200Os.52946.1.S1_at4/118+17078872..17079543expressed protein
LOC_Os08g28200OsAffx.13417.1.S1_x_at1/118+17078872..17079543expressed protein
LOC_Os08g28214OsAffx.29395.1.S1_at11/118+17081287..17088397Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os08g28214Os.53233.1.S1_at11/118+17081287..17088397Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os08g28214Os.7693.1.S1_s_at11/118+17081287..17088397Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os08g28230OsAffx.5963.1.S1_at11/118+17092535..17094947Iron-sulfur cluster assembly accessory protein
LOC_Os08g28240OsAffx.17202.1.S1_at10/118+17096324..17102645Retinal pigment epithelial membrane protein
LOC_Os08g28250OsAffx.17203.1.S1_at11/118+17107318..17108390hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53233.1.S1_at--93--3612Chr08:16715161..16715185 (25 bp)
CATTGGAACGGAATCCTGCAGCTTT
NONE
Os.53233.1.S1_at--906--6791Chr08:17086202..17086226 (25 bp)
GTTTTGAATAGCACAGCCCACAACT
LOC_Os08g28214
Os.53233.1.S1_at--1126--8292Chr08:16716226..16716249 (24 bp)
GGCTTCAAAGCTAGTGTTTTCTGTT
NONE
Os.53233.1.S1_at--599--2751Chr08:17085050..17085074 (25 bp)
AAGAACACTGTTCATGCGCATCATG
LOC_Os08g28214
Os.53233.1.S1_at--1015--9151Chr08:17085036..17085060 (25 bp)
TGCGCATCATGTGCAGAATCCTGCT
LOC_Os08g28214
Os.53233.1.S1_at--565--3612Chr08:16716415..16716439 (25 bp)
CATTGGCTGCATCTGTGAGCGATCA
NONE
Os.53233.1.S1_at--873--7372Chr08:16716429..16716453 (25 bp)
GTGAGCGATCATTCCATTAACAACA
NONE
Os.53233.1.S1_at--668--2052Chr08:16716456..16716480 (25 bp)
ACTTCACATGTAATTCTTTTGCAGC
NONE
Os.53233.1.S1_at--507--10352Chr08:16716485..16716509 (25 bp)
TTTTCAAATTTGTCACGGGCCCTGC
NONE
Os.53233.1.S1_at--663--8411Chr08:17084860..17084884 (25 bp)
GGCCCTGCTTCCTGATAGGCTGATA
LOC_Os08g28214
Os.53233.1.S1_at--206--8311Chr08:17084813..17084837 (25 bp)
GGCTATCTACTGCAGCAATCTGGAT
LOC_Os08g28214
Target Sequence 
CATTGGAACGGAATCCTGCAGCTTTTATGCCAAAAGTTTTGAATAGCACAGCCCACAACTGTGAGAGCAAAGCAGCAGAG
GGTGATATTGTGGGTAAACATACAAAGGGGTGTAAATGCAAGAGAACAGAGTGTCTGAAGAAATACTGTGAAGGCTTCAA
AGCTAGTGTTTTCTGTTCAGAGAACTGCAGATGTACGGGTTGCAAGAATTACAAGAGTAATGCAGATAGAATTTCCCAGA
AGAACACTGTTCATGCGCATCATGTGCAGAATCCTGCTTCAAGTGGGATGGTTGGACAATCTGTGATAATTTTCCATGCA
GCAGAAAATGACTCCAGTCTTTCATTGGCTGCATCTGTGAGCGATCATTCCATTAACAACAACACTTCACATGTAATTCT
TTTGCAGCATACTTTTCAAATTTGTCACGGGCCCTGCTTCCTGATAGGCTGATACTTAATGTACAACACAATTTAAGGCT
ATCTACTGCAGCAATCTGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53233.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis