Browse Element(s) Details


Os.7693.1.S1_s_at

Description gb:BI809140
DB_XREF= gi:15856328
DB_XREF=F001C10
CLONE=F001C10
TID=Os.7693.1
CNT=6
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.7693 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2821411/11Tesmin/TSO1-like CXC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g28170OsAffx.29393.1.S1_x_at11/118+17060489..17063020xanthine/uracil permease family protein, expressed
LOC_Os08g28170Os.14457.1.S1_at11/118+17060489..17063020xanthine/uracil permease family protein, expressed
LOC_Os08g28180Os.24203.1.A1_at11/118+17066467..17070235pentatricopeptide, putative, expressed
LOC_Os08g28190OsAffx.29394.1.S1_s_at11/118+17071842..17076528Actin-like protein 2, putative, expressed
LOC_Os08g28190OsAffx.29394.1.S1_at9/118+17071842..17076528Actin-like protein 2, putative, expressed
LOC_Os08g28200Os.52946.1.S1_at4/118+17078872..17079543expressed protein
LOC_Os08g28200OsAffx.13417.1.S1_x_at1/118+17078872..17079543expressed protein
LOC_Os08g28214OsAffx.29395.1.S1_at11/118+17081287..17088397Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os08g28214Os.53233.1.S1_at11/118+17081287..17088397Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os08g28214Os.7693.1.S1_s_at11/118+17081287..17088397Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os08g28230OsAffx.5963.1.S1_at11/118+17092535..17094947Iron-sulfur cluster assembly accessory protein
LOC_Os08g28240OsAffx.17202.1.S1_at10/118+17096324..17102645Retinal pigment epithelial membrane protein
LOC_Os08g28250OsAffx.17203.1.S1_at11/118+17107318..17108390hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7693.1.S1_s_at--335--3471Chr08:17081860..17081884 (25 bp)
CAGTGGCGCTATCACAACTTGATTG
LOC_Os08g28214
Os.7693.1.S1_s_at--273--10811Chr08:17081814..17081838 (25 bp)
TTGGGCCCTTTCTTGGGTACTACAT
LOC_Os08g28214
Os.7693.1.S1_s_at--901--1851Chr08:17081756..17081780 (25 bp)
ACGACATGAGCGGTTCTGTTCATCT
LOC_Os08g28214
Os.7693.1.S1_s_at--220--6751Chr08:17081739..17081763 (25 bp)
GTTCATCTTCCAACGTAATCAGTCG
LOC_Os08g28214
Os.7693.1.S1_s_at--1089--9751Chr08:17081724..17081748 (25 bp)
TAATCAGTCGAATTGCCCTTTTTCC
LOC_Os08g28214
Os.7693.1.S1_s_at--675--4291Chr08:17081708..17081732 (25 bp)
CCTTTTTCCCTACTATCAGAGTTCA
LOC_Os08g28214
Os.7693.1.S1_s_at--521--10051Chr08:17081571..17081595 (25 bp)
TAGTTACCCATCTGCTTCTCATGAT
LOC_Os08g28214
Os.7693.1.S1_s_at--550--1171Chr08:17081441..17081465 (25 bp)
AGTAACTACACTTTCCTGCATATGC
LOC_Os08g28214
Os.7693.1.S1_s_at--1057--4951Chr08:17081424..17081448 (25 bp)
GCATATGCCATGTTCTTTGTCAAAT
LOC_Os08g28214
Os.7693.1.S1_s_at--1008--2251Chr08:17081403..17081427 (25 bp)
AAATACCTGGTGCTTGCCTGTTATA
LOC_Os08g28214
Os.7693.1.S1_s_at--258--4471Chr08:17081388..17081412 (25 bp)
GCCTGTTATACGTTTTAGCACTATG
LOC_Os08g28214
Target Sequence 
CAGTGGCGCTATCACAACTTGATTGGCAACTCTGGTATAAATTGATTTGGGCCCTTTCTTGGGTACTACATTTTCCCACT
GCCTTGCCATGTNAACTCTCGGTGACGACATGAGCGGTTCTGTTCATCTTCCAACGTAATCAGTCGAATTGCCCTTTTTC
CCTACTATCAGAGTTCATGAATCCATGGAACGGCTGAATTGACAGGATTGAACAGAACGTGCTAGTGGTGATGGCATTTG
ACANAGGAAGTAGTATTGCATATCTTTTTCTGAGCANAGATTTTTATTAGCTAGTTACCCATCTGCTTCTCATGATCTTT
ANCACCCAAAGGGCACTCATGATTACAATTTCAGTTGACANAAGNACATGGCGTGCCAACGTATTTGATTAGCATATTAT
TACNATTTCATACCAGGTATAAAGTAACTACACTTTCCTGCATATGCCATGTTCTTTGTCAAATACCTGGTGCTTGCCTG
TTATACGTTTTAGCACTATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7693.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis