Browse Element(s) Details


OsAffx.18876.1.S1_at

Description tigr:9639.m01460
TID=OsAffx.18876.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1571011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g15649Os.51910.1.S1_x_at1/1111+8872531..8873098NA
LOC_Os11g15649Os.51910.1.S1_at1/1111+8872531..8873098NA
LOC_Os11g15660OsAffx.18873.1.S1_at11/1111+8875119..8875556hypothetical protein
LOC_Os11g15670OsAffx.18874.1.S1_at11/1111+8877437..8880094Leucine Rich Repeat family protein, expressed
LOC_Os11g15680Os.45173.1.S1_x_at4/1111+8882804..8884851retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g15680Os.38764.1.S1_x_at1/1111+8882804..8884851retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g15690NANA11+8885135..8889556retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g15700OsAffx.18875.1.S1_at11/1111+8892476..8893888NB-ARC domain containing protein, expressed
LOC_Os11g15710OsAffx.18876.1.S1_at11/1111+8896745..8897035hypothetical protein
LOC_Os11g15720NANA11+8900894..8901187hypothetical protein
LOC_Os11g15730OsAffx.18877.1.S1_at11/1111+8905187..8905519hypothetical protein
LOC_Os11g15740OsAffx.7121.1.S1_at10/1111+8906428..8907289hypothetical protein
LOC_Os11g15750OsAffx.17203.1.S1_at1/1111+8913206..8918227transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g15750OsAffx.27704.1.S1_at1/1111+8913206..8918227transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g15750Os.43636.1.S1_at1/1111+8913206..8918227transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g16250OsAffx.30997.1.S1_at11/1111+8920692..8923585hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18876.1.S1_at--261--4591Chr11:8896775..8896799 (25 bp)
GCGCACACCGAGCTGCTATGTCGCC
LOC_Os11g15710
OsAffx.18876.1.S1_at--562--10571Chr11:8896812..8896836 (25 bp)
TTCTCAGTTTTCAACCTCAGCGGGT
LOC_Os11g15710
OsAffx.18876.1.S1_at--338--9651Chr11:8896815..8896839 (25 bp)
TCAGTTTTCAACCTCAGCGGGTTGA
LOC_Os11g15710
OsAffx.18876.1.S1_at--44--10351Chr11:8896819..8896843 (25 bp)
TTTTCAACCTCAGCGGGTTGACGCG
LOC_Os11g15710
OsAffx.18876.1.S1_at--880--2612Chr11:8896824..8896848 (25 bp)
AACCTCAGCGGGTTGACGCGGGAGC
LOC_Os11g15710
OsAffx.18876.1.S1_at--931--1831Chr11:8896839..8896863 (25 bp)
ACGCGGGAGCGGTCGAGACGGATCT
LOC_Os11g15710
OsAffx.18876.1.S1_at--1072--5971Chr11:8896853..8896877 (25 bp)
GAGACGGATCTCGACCACACAAGAG
LOC_Os11g15710
OsAffx.18876.1.S1_at--506--5751Chr11:8896855..8896879 (25 bp)
GACGGATCTCGACCACACAAGAGAT
LOC_Os11g15710
OsAffx.18876.1.S1_at--306--9371Chr11:8896863..8896887 (25 bp)
TCGACCACACAAGAGATGGGCATGA
LOC_Os11g15710
OsAffx.18876.1.S1_at--218--6311Chr11:8896976..8897000 (25 bp)
GATGAACAGAGCGTCGGCGGACACC
LOC_Os11g15710
OsAffx.18876.1.S1_at--706--671Chr11:8896977..8897001 (25 bp)
ATGAACAGAGCGTCGGCGGACACCC
LOC_Os11g15710
Target Sequence 
GCGCACACCGAGCTGCTATGTCGCCCCTACTCCTCCCTTCTCAGTTTTCAACCTCAGCGGGTTGACGCGGGAGCGGTCGA
GACGGATCTCGACCACACAAGAGATGGGCATGAATGGGTAGAGGAAGGCGAGGCCAACGAGGAGCGCAAGGCCGCGAGGA
AGAGGAGGAGAGGGAGCGTGCGGCCAGCGGACGAGGACGGGGATGAACAGAGCGTCGGCGGACACCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18876.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis