Browse Element(s) Details


Os.4902.1.S1_at

Description gb:AK103706.1
DB_XREF= gi:32988915
TID=Os.4902.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4902 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-171-B07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033136N20, full insert sequence.
FL= gb:AK071935.1 gb:AK103706.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1633011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g16310NANA11+8969278..8972450hypothetical protein
LOC_Os11g16320Os.6641.1.S1_at11/1111+8978449..8982926expressed protein
LOC_Os11g16330Os.4902.2.S1_at11/1111+8984269..8988648F-box domain containing protein, expressed
LOC_Os11g16330Os.4902.1.S1_at11/1111+8984269..8988648F-box domain containing protein, expressed
LOC_Os11g16330OsAffx.30909.1.S1_at1/1111+8984269..8988648F-box domain containing protein, expressed
LOC_Os11g16340OsAffx.18879.1.S1_at10/1111+8996153..8997500hypothetical protein
LOC_Os11g16350OsAffx.30998.1.S1_at11/1111+9000220..9001284expressed protein
LOC_Os11g16360NANA11+9003326..9003547hypothetical protein
LOC_Os11g16370Os.15410.1.S1_at11/1111+9012155..9020566uridine kinase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4902.1.S1_at--1084--9311Chr11:8985223..8985247 (25 bp)
TCCCTTCCTGAAGCATTCGTTGTAG
LOC_Os11g16330
Os.4902.1.S1_at--1112--7111Chr11:8985167..8985191 (25 bp)
GTCATGCCACTACACTATTCAGATT
LOC_Os11g16330
Os.4902.1.S1_at--910--7391Chr11:8984880..8984904 (25 bp)
GTGATGGGCAACTTGACGCTTGTCC
LOC_Os11g16330
Os.4902.1.S1_at--761--6931Chr11:8984584..8984608 (25 bp)
GTGGTCAGCCTAGAGGAAGCCCTTT
LOC_Os11g16330
Os.4902.1.S1_at--715--5411Chr11:8984569..8984593 (25 bp)
GAAGCCCTTTTATTGCCGACATAGC
LOC_Os11g16330
Os.4902.1.S1_at--239--8291Chr11:8984467..8984491 (25 bp)
GGCTAATTCTTGCTAGAGCGCCTTG
LOC_Os11g16330
Os.4902.1.S1_at--831--1231Chr11:8984453..8984477 (25 bp)
AGAGCGCCTTGTTGGAAATTTTCCT
LOC_Os11g16330
Os.4902.1.S1_at--651--6511Chr11:8984427..8984451 (25 bp)
GATATATTTTTGTACGTGCAGCTCT
LOC_Os11g16330
Os.4902.1.S1_at--138--5071Chr11:8984410..8984434 (25 bp)
GCAGCTCTCGGAATTGTTGTCTTGA
LOC_Os11g16330
Os.4902.1.S1_at--498--7371Chr11:8984320..8984344 (25 bp)
GTGACATGATGTTACTTTTCGGCAG
LOC_Os11g16330
Os.4902.1.S1_at--366--9771Chr11:8984275..8984299 (25 bp)
TAATGCGGCTTGCTTGCTTCTGATA
LOC_Os11g16330
Target Sequence 
TCCCTTCCTGAAGCATTCGTTGTAGATGGCAAGTGGTATTCTTCCTTCCAGCTTCAGTCATGCCACTACACTATTCAGAT
TGGAGATGAAGTCCTCCCTTACACATGCAACTATGGCGGCCATGGCAAGTGTCCTCTCCTGAGGTGCGGCGAGGAGCTGT
TTGTCTATGGGTGTTCCATATCGGCAGCACTGGAGCCTGGATCCGTGATGGGCAACTTGACGCTTGTCCCTTGGAGGTGT
GGTCAGCCTAGAGGAAGCCCTTTTATTGCCGACATAGCTCCTTTCCCTCTGCACCCGCCTGACTACATCTTCTGAAGAAT
TGGAAGCTGGTCCATCAAAGCATGCATGCAGTTGAGGCTAATTCTTGCTAGAGCGCCTTGTTGGAAATTTTCCTGGATAT
ATTTTTGTACGTGCAGCTCTCGGAATTGTTGTCTTGACAAGTGACGAAAGTCTCATGAGCTGTGAATTATATATACACAC
ACACACAACACACTTTTCGGCAGTGACATGATGTTACTTTTCGGCAGTGACATGATGTTCCGTTTGTTAATGCGGCTTGC
TTGCTTCTGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4902.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis