Browse Element(s) Details


OsAffx.18879.1.S1_at

Description tigr:9639.m01475
TID=OsAffx.18879.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1634010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g16310NANA11+8969278..8972450hypothetical protein
LOC_Os11g16320Os.6641.1.S1_at11/1111+8978449..8982926expressed protein
LOC_Os11g16330Os.4902.2.S1_at11/1111+8984269..8988648F-box domain containing protein, expressed
LOC_Os11g16330Os.4902.1.S1_at11/1111+8984269..8988648F-box domain containing protein, expressed
LOC_Os11g16330OsAffx.30909.1.S1_at1/1111+8984269..8988648F-box domain containing protein, expressed
LOC_Os11g16340OsAffx.18879.1.S1_at10/1111+8996153..8997500hypothetical protein
LOC_Os11g16350OsAffx.30998.1.S1_at11/1111+9000220..9001284expressed protein
LOC_Os11g16360NANA11+9003326..9003547hypothetical protein
LOC_Os11g16370Os.15410.1.S1_at11/1111+9012155..9020566uridine kinase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18879.1.S1_at--140--6051NONE
GAGATAGAGTGCATGGCCCTATTCA
NONE
OsAffx.18879.1.S1_at--223--8414Chr11:8997026..8997050 (25 bp)
GGCCCTATTCATGTGGCAAGGTGCA
LOC_Os11g16340
OsAffx.18879.1.S1_at--425--972Chr11:8997050..8997074 (25 bp)
AGGAGCGAGGCAACCTGTAGCCATG
LOC_Os11g16340
OsAffx.18879.1.S1_at--1153--2612Chr11:8997061..8997085 (25 bp)
AACCTGTAGCCATGCCTGCGTGCTC
LOC_Os11g16340
OsAffx.18879.1.S1_at--1121--4171Chr11:8997133..8997157 (25 bp)
CCCGGTTGGCCATGGTCGCACTTGG
LOC_Os11g16340
OsAffx.18879.1.S1_at--963--1791Chr11:8997226..8997250 (25 bp)
ACGCGAGGTCGCGACGTCAACAACG
LOC_Os11g16340
OsAffx.18879.1.S1_at--556--2391Chr11:8997244..8997268 (25 bp)
AACAACGGAGGTGCCGAGGAAACTG
LOC_Os11g16340
OsAffx.18879.1.S1_at--744--3791Chr11:8997351..8997375 (25 bp)
CTCGACGTGGATGGCCACGACAGAG
LOC_Os11g16340
OsAffx.18879.1.S1_at--658--1851Chr11:8997367..8997391 (25 bp)
ACGACAGAGGTTGCCCAAGCCGAGG
LOC_Os11g16340
OsAffx.18879.1.S1_at--275--3411Chr11:8997422..8997446 (25 bp)
CAGCATGGTGGAGCCGACACATGTA
LOC_Os11g16340
OsAffx.18879.1.S1_at--757--1671Chr11:8997433..8997457 (25 bp)
AGCCGACACATGTAGGCCGGCGCGT
LOC_Os11g16340
Target Sequence 
GAGATAGAGTGCATGGCCCTATTCATGTGGCAAGGTGCAGGAGCGAGGCAACCTGTAGCCATGCCTGCGTGCTCGCGCGA
GGCCGCCTCCGCGTCAGCTTCGCTCCGCCGCCGTGGTTTTCCCCGGTTGGCCATGGTCGCACTTGGGTGGGGAGGCGACG
TAGCCGCGCGCTGCGCGCAGCCGGCGGAGTCGCACGTGGCGGCGGCGGCGAGCCACGCGAGGTCGCGACGTCAACAACGG
AGGTGCCGAGGAAACTGCCTCGGGCGAGGCCAGTGCGGCGTCGCTTGCGGCGCGGAGGCCGGTGCACGGAAGCCGGTGCA
ACCGGCGGAGACGGTGGAGCTCGACGTGGATGGCCACGACAGAGGTTGCCCAAGCCGAGGCGGGTGCGGCATCGCCCGCG
GTGAGGAGGCCAGCATGGTGGAGCCGACACATGTAGGCCGGCGCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18879.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis