Browse Element(s) Details


Os.4902.2.S1_at

Description gb:AK110777.1
DB_XREF= gi:32995986
TID=Os.4902.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4902 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-171-B07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-171-B07, full insert sequence.
FL= gb:AK110777.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1633011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g16310NANA11+8969278..8972450hypothetical protein
LOC_Os11g16320Os.6641.1.S1_at11/1111+8978449..8982926expressed protein
LOC_Os11g16330Os.4902.2.S1_at11/1111+8984269..8988648F-box domain containing protein, expressed
LOC_Os11g16330Os.4902.1.S1_at11/1111+8984269..8988648F-box domain containing protein, expressed
LOC_Os11g16330OsAffx.30909.1.S1_at1/1111+8984269..8988648F-box domain containing protein, expressed
LOC_Os11g16340OsAffx.18879.1.S1_at10/1111+8996153..8997500hypothetical protein
LOC_Os11g16350OsAffx.30998.1.S1_at11/1111+9000220..9001284expressed protein
LOC_Os11g16360NANA11+9003326..9003547hypothetical protein
LOC_Os11g16370Os.15410.1.S1_at11/1111+9012155..9020566uridine kinase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4902.2.S1_at--602--3211Chr11:8987451..8987475 (25 bp)
CAAGGTTAGTAAATTGGCTTTTCTG
LOC_Os11g16330
Os.4902.2.S1_at--571--4891Chr11:8987435..8987459 (25 bp)
GCTTTTCTGTTAGTTTATTGCCATG
LOC_Os11g16330
Os.4902.2.S1_at--1073--10211Chr11:8987420..8987444 (25 bp)
TATTGCCATGCTTAATATGCTGATT
LOC_Os11g16330
Os.4902.2.S1_at--528--3091Chr11:8987407..8987431 (25 bp)
AATATGCTGATTGCATTGCGAGGGT
LOC_Os11g16330
Os.4902.2.S1_at--111--4951Chr11:8987395..8987419 (25 bp)
GCATTGCGAGGGTAATTGAATCTAT
LOC_Os11g16330
Os.4902.2.S1_at--206--5391Chr11:8987367..8987391 (25 bp)
GAAGCACATAGCTAGCCTACTGAAA
LOC_Os11g16330
Os.4902.2.S1_at--30--311Chr11:8987360..8987384 (25 bp)
ATAGCTAGCCTACTGAAAGTTTTTT
LOC_Os11g16330
Os.4902.2.S1_at--770--6551Chr11:8987317..8987341 (25 bp)
GATTAGATTTTGCTGTTTTATGTTT
LOC_Os11g16330
Os.4902.2.S1_at--253--8871Chr11:8987290..8987314 (25 bp)
TGATGAGCGTCATCGATGTATGATG
LOC_Os11g16330
Os.4902.2.S1_at--730--2431Chr11:8987216..8987240 (25 bp)
AAAAGTTTGGCTGGTACTGAGTGCA
LOC_Os11g16330
Os.4902.2.S1_at--192--4731Chr11:8987207..8987231 (25 bp)
GCTGGTACTGAGTGCAGAGCTCGTT
LOC_Os11g16330
Target Sequence 
CAAGGTTAGTAAATTGGCTTTTCTGTTAGTTTATTGCCATGCTTAATATGCTGATTGCATTGCGAGGGTAATTGAATCTA
TTTTGAAGCACATAGCTAGCCTACTGAAAGTTTTTTTGCTGTTTTATATTTAAAGATTAGATTTTGCTGTTTTATGTTTA
ATGATGAGCGTCATCGATGTATGATGATGGGGGCTCTGACCCCTGTTCTTCTCCCATAAAAGCATTTTGAAATCTAAAAG
TTTGGCTGGTACTGAGTGCAGAGCTCGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4902.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis