Browse Element(s) Details


OsAffx.30998.1.S1_at

Description tigr:9639.m01476
TID=OsAffx.30998.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1635011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g16320Os.6641.1.S1_at11/1111+8978449..8982926expressed protein
LOC_Os11g16330Os.4902.2.S1_at11/1111+8984269..8988648F-box domain containing protein, expressed
LOC_Os11g16330Os.4902.1.S1_at11/1111+8984269..8988648F-box domain containing protein, expressed
LOC_Os11g16330OsAffx.30909.1.S1_at1/1111+8984269..8988648F-box domain containing protein, expressed
LOC_Os11g16340OsAffx.18879.1.S1_at10/1111+8996153..8997500hypothetical protein
LOC_Os11g16350OsAffx.30998.1.S1_at11/1111+9000220..9001284expressed protein
LOC_Os11g16360NANA11+9003326..9003547hypothetical protein
LOC_Os11g16370Os.15410.1.S1_at11/1111+9012155..9020566uridine kinase family protein, expressed
LOC_Os11g16380NANA11+9024529..9024792hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30998.1.S1_at--340--1731Chr11:9000795..9000819 (25 bp)
ACCATGGACAAGTGCATCTCCACCT
LOC_Os11g16350
OsAffx.30998.1.S1_at--159--8531Chr11:9000791..9000815 (25 bp)
TGGACAAGTGCATCTCCACCTGCAT
LOC_Os11g16350
OsAffx.30998.1.S1_at--999--8551Chr11:9000713..9000737 (25 bp)
TGGAGGACCGGCTGCACTCCATCCA
LOC_Os11g16350
OsAffx.30998.1.S1_at--767--9291Chr11:9000575..9000599 (25 bp)
TCCGCAACGTCTACGCCGTGCTCGA
LOC_Os11g16350
OsAffx.30998.1.S1_at--97--9271Chr11:9000548..9000572 (25 bp)
TCCTCGAGCAAGACCTCTCGCAGGT
LOC_Os11g16350
OsAffx.30998.1.S1_at--850--4071Chr11:9000544..9000568 (25 bp)
CGAGCAAGACCTCTCGCAGGTCTAC
LOC_Os11g16350
OsAffx.30998.1.S1_at--359--10851Chr11:9000444..9000468 (25 bp)
TTGGAGAAGGAATGCGACGACGCCG
LOC_Os11g16350
OsAffx.30998.1.S1_at--1054--1811Chr11:9000396..9000420 (25 bp)
ACGCTGGAGGCGAAGGCCTACGACA
LOC_Os11g16350
OsAffx.30998.1.S1_at--734--891Chr11:9000389..9000413 (25 bp)
AGGCGAAGGCCTACGACAACGCCGC
LOC_Os11g16350
OsAffx.30998.1.S1_at--1036--3331Chr11:9000346..9000370 (25 bp)
CACGGCCGCTAAGGAGAGCAGCACG
LOC_Os11g16350
OsAffx.30998.1.S1_at--801--3911Chr11:9000251..9000275 (25 bp)
CGGCCGCGGCCGCTAAGGAGAGCAG
LOC_Os11g16350
Target Sequence 
ACCATGGACAAGTGCATCTCCACCTGCATCCTGGGCCTCGGCGCCGCCGAGGCGTACCTCGCCGCGCTCCAGCCGCTCCC
GGTGGAGGACCGGCTGCACTCCATCCACGACGGCCTCTCCGCGCTCTTCCGCGACGGCAGCGACGTCCCCGCGGCGTACT
CCACCGGCTGCCCCGCCGGGAGCATCCGCAACGTCGACGAGGAGTCCGTCGTCGCCACGTTCCGCAACGTCTACGCCGTG
CTCGACCTCCTCGAGCAAGACCTCTCGCAGGTCTACTCCTCCGCTACGCCATCTACCACGACGCCAGCCAAGCCGGCGGC
GGAGGCGCCGGCGGCGGAGGCGGCGGCGGCGTTGGAGAAGGAATGCGACGACGCCGCCAAGCCGCAGACCAGCACGCCGA
CGCTGGAGGCGAAGGCCTACGACAACGCCGCCGGCGCGCCCGCGGCGGCCACGGCCGCTAAGGAGAGCAGCACGCCGGCG
ACGGCGACACCGGTGGCGCAGGCCTACGACAACGCCGGCGCCGGCGCCGCCAAGGAGGAGCCCGCGGCCGCGGCCGCTAA
GGAGAGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30998.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis