Browse Element(s) Details


Os.15410.1.S1_at

Description gb:AK103877.1
DB_XREF= gi:32989086
TID=Os.15410.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15410 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033149N02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033149N02, full insert sequence.
FL= gb:AK103877.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1637011/11uridine kinase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g16330Os.4902.2.S1_at11/1111+8984269..8988648F-box domain containing protein, expressed
LOC_Os11g16330Os.4902.1.S1_at11/1111+8984269..8988648F-box domain containing protein, expressed
LOC_Os11g16330OsAffx.30909.1.S1_at1/1111+8984269..8988648F-box domain containing protein, expressed
LOC_Os11g16340OsAffx.18879.1.S1_at10/1111+8996153..8997500hypothetical protein
LOC_Os11g16350OsAffx.30998.1.S1_at11/1111+9000220..9001284expressed protein
LOC_Os11g16360NANA11+9003326..9003547hypothetical protein
LOC_Os11g16370Os.15410.1.S1_at11/1111+9012155..9020566uridine kinase family protein, expressed
LOC_Os11g16380NANA11+9024529..9024792hypothetical protein
LOC_Os11g16390Os.10906.1.S1_at11/1111+9033734..9037297expressed protein
LOC_Os11g16400Os.21454.1.S1_at1/1111+9043090..9046890expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009058biological_processbiosynthesis
GO:0004845molecular_functionuracil phosphoribosyltransferase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15410.1.S1_at--879--9171Chr11:9020256..9020280 (25 bp)
TGCCGGCTGCATCTCCATTTTTTGA
LOC_Os11g16370
Os.15410.1.S1_at--769--2071Chr11:9020295..9020319 (25 bp)
ACATTTCGAAAGTCAGATCCCAATA
LOC_Os11g16370
Os.15410.1.S1_at--2--8791Chr11:9020396..9020420 (25 bp)
TGTTTTTCTGATATCGTCTGACTTC
LOC_Os11g16370
Os.15410.1.S1_at--848--251Chr11:9020406..9020430 (25 bp)
ATATCGTCTGACTTCTGCGCTTGCA
LOC_Os11g16370
Os.15410.1.S1_at--871--9151Chr11:9020421..9020445 (25 bp)
TGCGCTTGCAGTTTGCTGTGATTTC
LOC_Os11g16370
Os.15410.1.S1_at--436--6852Chr11:9020431..9020455 (25 bp)
GTTTGCTGTGATTTCATCTGTATGT
LOC_Os11g16370
Os.15410.1.S1_at--1038--471Chr11:9020446..9020470 (25 bp)
ATCTGTATGTGATCCGCTACTTCTC
LOC_Os11g16370
Os.15410.1.S1_at--394--4851Chr11:9020461..9020485 (25 bp)
GCTACTTCTCTTTCCTAGAATTGGA
LOC_Os11g16370
Os.15410.1.S1_at--724--7551Chr11:9020504..9020528 (25 bp)
GGGCCAAATTTTGTAATCTCTGATT
LOC_Os11g16370
Os.15410.1.S1_at--712--7071Chr11:9020516..9020540 (25 bp)
GTAATCTCTGATTTGTTATCTTTCA
LOC_Os11g16370
Os.15410.1.S1_at--157--451Chr11:9020533..9020557 (25 bp)
ATCTTTCAGATTAGCAATGCAATGC
LOC_Os11g16370
Target Sequence 
TGCCGGCTGCATCTCCATTTTTTGAGAAACTTATTTTTTACATTTCGAAAGTCAGATCCCAATATTAATGTATNCATTAC
CAGAAACTCTGTATCGGTTAACATTACAGACCGCCTCATAAATCGANCNAATTCCAATTTTGTTTTTCTGATATCGTCTG
ACTTCTGCGCTTGCAGTTTGCTGTGATTTCATCTGTATGTGATCCGCTACTTCTCTTTCCTAGAATTGGAGATGATTGGC
TTGTATCAGGGCCAAATTTTGTAATCTCTGATTTGTTATCTTTCAGATTAGCAATGCAATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15410.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis