Browse Element(s) Details


Os.10906.1.S1_at

Description gb:CB655117
DB_XREF= gi:29658842
DB_XREF=OSJNEc08D11.r
CLONE=OSJNEc08D11
TID=Os.10906.1
CNT=18
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.10906 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_563759.1 (A.thaliana) F-box protein family (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1639011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g16370Os.15410.1.S1_at11/1111+9012155..9020566uridine kinase family protein, expressed
LOC_Os11g16380NANA11+9024529..9024792hypothetical protein
LOC_Os11g16390Os.10906.1.S1_at11/1111+9033734..9037297expressed protein
LOC_Os11g16400Os.21454.1.S1_at1/1111+9043090..9046890expressed protein
LOC_Os11g16410Os.11370.1.S1_at10/1111+9051714..9056773oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os11g16420Os.24606.1.S1_at11/1111+9057133..9063300ProFAR isomerase associated family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10906.1.S1_at--502--10271Chr11:9034535..9034559 (25 bp)
TTTGCACCAGAGCACCCTGAAAGTA
LOC_Os11g16390
Os.10906.1.S1_at--302--1511Chr11:9034525..9034549 (25 bp)
AGCACCCTGAAAGTAGGCGGCCTGG
LOC_Os11g16390
Os.10906.1.S1_at--713--6811Chr11:9034492..9034516 (25 bp)
GTTTATATGCATACTCCATTCGCCT
LOC_Os11g16390
Os.10906.1.S1_at--965--9231Chr11:9034478..9034502 (25 bp)
TCCATTCGCCTGTCAGTTCCAGAGG
LOC_Os11g16390
Os.10906.1.S1_at--212--7111Chr11:9034467..9034491 (25 bp)
GTCAGTTCCAGAGGCATGCATGCTA
LOC_Os11g16390
Os.10906.1.S1_at--457--4991Chr11:9034454..9034478 (25 bp)
GCATGCATGCTAGGTGGTGTGTACT
LOC_Os11g16390
Os.10906.1.S1_at--574--1051Chr11:9034443..9034467 (25 bp)
AGGTGGTGTGTACTATTCCTCGTGC
LOC_Os11g16390
Os.10906.1.S1_at--607--8751Chr11:9034435..9034459 (25 bp)
TGTACTATTCCTCGTGCCAGCTTTA
LOC_Os11g16390
Os.10906.1.S1_at--875--8191Chr11:9034234..9034255 (22 bp)
GGAAGTACCCTCTACTAACTACAGG
LOC_Os11g16390
Os.10906.1.S1_at--10--2931Chr11:9033979..9034003 (25 bp)
AAGGAAAGCCATTTGAGGTCACGGT
LOC_Os11g16390
Os.10906.1.S1_at--549--8891Chr11:9033966..9033990 (25 bp)
TGAGGTCACGGTGGCTGCGTTCCCT
LOC_Os11g16390
Target Sequence 
TTTGCACCAGAGCACCCTGAAAGTAGGCGGCCTGGGGCTAAATGTTTATATGCATACTCCATTCGCCTGTCAGTTCCAGA
GGCATGCATGCTAGGTGGTGTGTACTATTCCTCGTGCCAGCTTTACTCGCGCCACTGGATCATCCGATGGAGAGACCGGG
TTGTTTCTGATGTGAACGGGGAAGGTGTTATTGGGAAGTACCCTCTACTAACTACAGGCCAGGAAGAGTTTGTGTATGAG
AGTTGCACGCCTCTGCCTGACAGTCCCGGATCTGTGGAGGGCTCTTTCACGTTTGTTCCGGGGAAGTTGAGCCGGCCTGA
AGGAAAGCCATTTGAGGTCACGGTGGCTGCGTTCCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10906.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis