Browse Element(s) Details


Os.24606.1.S1_at

Description gb:AK063462.1
DB_XREF= gi:32973480
TID=Os.24606.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24606 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-115-H03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-115-H03, full insert sequence.
FL= gb:AK063462.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1642011/11ProFAR isomerase associated family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g16390Os.10906.1.S1_at11/1111+9033734..9037297expressed protein
LOC_Os11g16400Os.21454.1.S1_at1/1111+9043090..9046890expressed protein
LOC_Os11g16410Os.11370.1.S1_at10/1111+9051714..9056773oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os11g16420Os.24606.1.S1_at11/1111+9057133..9063300ProFAR isomerase associated family protein, expressed
LOC_Os11g16430OsAffx.7123.1.S1_at11/1111+9067434..9073083diphthamide biosynthesis protein 2 containing protein, expressed
LOC_Os11g16440OsAffx.18880.1.S1_at11/1111+9073304..9074159hypothetical protein
LOC_Os11g16450NANA11+9076526..9079245retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g16460OsAffx.31000.1.S1_at9/1111+9080626..90839352-oxoglutarate-dependent dioxygenase, putative
LOC_Os11g16470Os.9566.1.S1_x_at11/1111+9086375..9090648NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24606.1.S1_at--1085--6591Chr11:9058905..9058929 (25 bp)
GATTGGGTAGACTCCTTGGTATGGT
LOC_Os11g16420
Os.24606.1.S1_at--16--1231Chr11:9058865..9058889 (25 bp)
AGTTCAAGATGGACTACCTCCTCCA
LOC_Os11g16420
Os.24606.1.S1_at--1000--1751Chr11:9058850..9058874 (25 bp)
ACCTCCTCCAAGATCTGTACTGATA
LOC_Os11g16420
Os.24606.1.S1_at--986--3871Chr11:9058836..9058860 (25 bp)
CTGTACTGATATCTTCTTGCATGAA
LOC_Os11g16420
Os.24606.1.S1_at--929--4971Chr11:9058460..9058484 (25 bp)
GCATCCGAAATCATTGACCACTTGT
LOC_Os11g16420
Os.24606.1.S1_at--719--10451Chr11:9058405..9058429 (25 bp)
TTACTCAACCCTATGGTCCTGTTTA
LOC_Os11g16420
Os.24606.1.S1_at--682--7251Chr11:9058390..9058414 (25 bp)
GTCCTGTTTATGAAATCCGTGTGCA
LOC_Os11g16420
Os.24606.1.S1_at--399--6891Chr11:9057366..9057390 (25 bp)
GTATAGTCCAGAGGGCTTCTCGAGA
LOC_Os11g16420
Os.24606.1.S1_at--321--6131Chr11:9057303..9057327 (25 bp)
GAGTGGTTCTTTTGCAACACTTGTA
LOC_Os11g16420
Os.24606.1.S1_at--729--2411Chr11:9057256..9057280 (25 bp)
AAAAATTTTCTTACAGCAGCTGCTA
LOC_Os11g16420
Os.24606.1.S1_at--1116--4971Chr11:9057152..9057176 (25 bp)
GCATCCTGATGCTGGAAGTCTGTTA
LOC_Os11g16420
Target Sequence 
GATTGGGTAGACTCCTTGGTATGGTGAAAACTGCAGGTACAGTTCAAGATGGACTACCTCCTCCAAGATCTGTACTGATA
TCTTCTTGCATGAAGCTACATCAACCAAATGAGTAGCGATGGATGGTGGGGCAGCTTCCACGGAAGTGATGTAAAGAAAA
ACCAACTTGCATCCGAAATCATTGACCACTTGTTACGTGAATGCTGTTGGATGAATATTCATCTTACTCAACCCTATGGT
CCTGTTTATGAAATCCGTGTGCATGAAGGTTATGGTGCCAGATGGTCTCAAGATGGCTCGAAGTTTATTGGATTCTTGGA
GCCGTATAGTCCAGAGGGCTTCTCGAGAGGGTGGAAACACTAGAACAAGAAGACCTGCATGTTGTAGAGTGGTTCTTTTG
CAACACTTGTATATGCATTGTCTATGCCAAGTTAAAAATTTTCTTACAGCAGCTGCTATGTCAAGCATTTTTGTACTTGT
ATTTTTTTTTAAAAAAAAAAACTTTGGTGTATTATTTTTCCTGGAATAACTTAGAACTGCATCCTGATGCTGGAAGTCTG
TTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24606.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis