Browse Element(s) Details


OsAffx.31000.1.S1_at

Description tigr:9639.m01486
TID=OsAffx.31000.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to 38288-39393
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g164609/112-oxoglutarate-dependent dioxygenase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g16410Os.11370.1.S1_at10/1111+9051714..9056773oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os11g16420Os.24606.1.S1_at11/1111+9057133..9063300ProFAR isomerase associated family protein, expressed
LOC_Os11g16430OsAffx.7123.1.S1_at11/1111+9067434..9073083diphthamide biosynthesis protein 2 containing protein, expressed
LOC_Os11g16440OsAffx.18880.1.S1_at11/1111+9073304..9074159hypothetical protein
LOC_Os11g16450NANA11+9076526..9079245retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g16460OsAffx.31000.1.S1_at9/1111+9080626..90839352-oxoglutarate-dependent dioxygenase, putative
LOC_Os11g16470Os.9566.1.S1_x_at11/1111+9086375..9090648NB-ARC domain containing protein, expressed
LOC_Os11g16480Os.8755.1.S1_at10/1111+9091791..9096354transposon protein, putative, unclassified, expressed
LOC_Os11g16480Os.50840.1.S1_at1/1111+9091791..9096354transposon protein, putative, unclassified, expressed
LOC_Os11g16490Os.9566.1.S1_x_at3/1111+9106638..9107425hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0019761biological_processglucosinolate biosynthesis
GO:0016706molecular_functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31000.1.S1_at--428--9451NONE
TCGGCGTCAGCGATTCACCGGCACT
NONE
OsAffx.31000.1.S1_at--788--10491NONE
TTCACCGGCACTGACAAACGGGCAA
NONE
OsAffx.31000.1.S1_at--765--2571Chr11:9083642..9083666 (25 bp)
AACGGGCAAGTGTACAACCCTCTGC
LOC_Os11g16460
OsAffx.31000.1.S1_at--423--2191Chr11:9083655..9083679 (25 bp)
ACAACCCTCTGCACCGGGTGGTGGT
LOC_Os11g16460
OsAffx.31000.1.S1_at--281--1811Chr11:9083775..9083799 (25 bp)
ACCCGGCCATGTACAGGCCATTCGA
LOC_Os11g16460
OsAffx.31000.1.S1_at--773--2111Chr11:9083787..9083811 (25 bp)
ACAGGCCATTCGACTACGGCGAGTA
LOC_Os11g16460
OsAffx.31000.1.S1_at--852--8371Chr11:9083804..9083828 (25 bp)
GGCGAGTACGCCGTGTTCTGCTACT
LOC_Os11g16460
OsAffx.31000.1.S1_at--650--4251Chr11:9083814..9083838 (25 bp)
CCGTGTTCTGCTACTTGCCGGAGAA
LOC_Os11g16460
OsAffx.31000.1.S1_at--1151--6711Chr11:9083818..9083842 (25 bp)
GTTCTGCTACTTGCCGGAGAACATG
LOC_Os11g16460
OsAffx.31000.1.S1_at--877--8011Chr11:9083848..9083872 (25 bp)
GGAGGTCATGAAGCACGCCCACAAG
LOC_Os11g16460
OsAffx.31000.1.S1_at--397--671Chr11:9083855..9083879 (25 bp)
ATGAAGCACGCCCACAAGCTGGAGG
LOC_Os11g16460
Target Sequence 
TCGGCGTCAGCGATTCACCGGCACTGACAAACGGGCAAGTGTACAACCCTCTGCACCGGGTGGTGGTGTCCGGCGACGAG
GCCCGCTACTCCGCCATCCTCTTCTCCCTCCCGGTGGACGGCGCCGCCGTCCGCCCGCTCGACGAGGCGGTCGACGGCGA
CCACCCGGCCATGTACAGGCCATTCGACTACGGCGAGTACGCCGTGTTCTGCTACTTGCCGGAGAACATGACGCCGGAGG
TCATGAAGCACGCCCACAAGCTGGAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31000.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis