Browse Element(s) Details


Os.9566.1.S1_x_at

Description gb:AK066020.1
DB_XREF= gi:32976038
TID=Os.9566.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9566 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013046N19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013046N19, full insert sequence.
FL= gb:AK066020.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1647011/11NB-ARC domain containing protein, expressed
LOC_Os11g164903/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g16420Os.24606.1.S1_at11/1111+9057133..9063300ProFAR isomerase associated family protein, expressed
LOC_Os11g16430OsAffx.7123.1.S1_at11/1111+9067434..9073083diphthamide biosynthesis protein 2 containing protein, expressed
LOC_Os11g16440OsAffx.18880.1.S1_at11/1111+9073304..9074159hypothetical protein
LOC_Os11g16450NANA11+9076526..9079245retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g16460OsAffx.31000.1.S1_at9/1111+9080626..90839352-oxoglutarate-dependent dioxygenase, putative
LOC_Os11g16470Os.9566.1.S1_x_at11/1111+9086375..9090648NB-ARC domain containing protein, expressed
LOC_Os11g16480Os.8755.1.S1_at10/1111+9091791..9096354transposon protein, putative, unclassified, expressed
LOC_Os11g16480Os.50840.1.S1_at1/1111+9091791..9096354transposon protein, putative, unclassified, expressed
LOC_Os11g16490Os.9566.1.S1_x_at3/1111+9106638..9107425hypothetical protein
LOC_Os11g16500NANA11+9112594..9112958hypothetical protein
LOC_Os11g16510NANA11+9114797..9115739disease resistance protein RPM1 homolog, putative

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9566.1.S1_x_at--609--251Chr11:9090083..9090107 (25 bp)
ATATCTTCTATGTTTCATTCCTGGG
LOC_Os11g16470
Os.9566.1.S1_x_at--617--1112Chr11:9090116..9090140 (25 bp)
AGTGTTCGAGCCAGGAGCTATGCAA
LOC_Os11g16470
Os.9566.1.S1_x_at--893--7411Chr11:9090196..9090220 (25 bp)
GTGTTTTGGACTTTGGTCTCCAGCA
LOC_Os11g16470
Os.9566.1.S1_x_at--893--10331Chr11:9090223..9090247 (25 bp)
TTTCAAGCCTCCAGCACATAAGTGC
LOC_Os11g16470
Os.9566.1.S1_x_at--120--9752Chr11:9090250..9090274 (25 bp)
TAATTATTCCATCTGGTGCTACCAG
LOC_Os11g16470
Os.9566.1.S1_x_at--554--1332Chr11:9090293..9090317 (25 bp)
AGAGGATGCCATCAGGAGTGCTACA
LOC_Os11g16470
Os.9566.1.S1_x_at--804--6112Chr11:9090308..9090332 (25 bp)
GAGTGCTACAAGTATCCATCCCAAC
LOC_Os11g16470
Os.9566.1.S1_x_at--66--6091Chr11:9090398..9090422 (25 bp)
GAGTCAAAATTCTCCCCGAAACAAG
LOC_Os11g16470
Os.9566.1.S1_x_at--808--6951Chr11:9090422..9090446 (25 bp)
GTAGACCTCATTTTCATGTGTCTTT
LOC_Os11g16470
Os.9566.1.S1_x_at--724--7451Chr11:9090439..9090463 (25 bp)
GTGTCTTTGTGTTATATGCTCCTCT
LOC_Os11g16470
Os.9566.1.S1_x_at--367--10071Chr11:9090534..9090558 (25 bp)
TAGTCCTCTGATACTGTAGTCCTAA
LOC_Os11g16470
Target Sequence 
ATATCTTCTATGTTTCATTCCTGGGATGTGGCCAGTGTTCGAGCCAGGAGCTATGCAAGAATTACAGAAGTATCNACCTC
ACTTTCANAGCTNACAGAAAGTACATTGCAAGAATAGTGTTTTGGACTTTGGTCTCCAGCATCTTTCAAGCCTCCAGCAC
ATAAGTGCGATAATTATTCCATCTGGTGCTACCAGTGAGGACACATTGGTTGCAGAGGATGCCATCAGGAGTGCTACAAG
TATCCATCCCAACCAACCAATAGCTGAAATTTTTGTCGAGTAAAAAAAATGGTAACCGGCCAGTTATAGGTTTTCTACGA
GTCAAAATTCTCCCCGAAACAAGTAGACCTCATTTTCATGTGTCTTTGTGTTATATGCTCCTCTGTTCTGGTTGCATTTG
AGAATGTATGCCTTTGTTAGTATAACCCTTTCACAAGTGAAGAACTAATTACATTAGTCCTCTGATACTGTAGTCCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9566.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis