Browse Element(s) Details


Os.8755.1.S1_at

Description gb:AK073284.1
DB_XREF= gi:32983307
TID=Os.8755.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8755 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033028G10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033028G10, full insert sequence.
FL= gb:AK073284.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1648010/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g16430OsAffx.7123.1.S1_at11/1111+9067434..9073083diphthamide biosynthesis protein 2 containing protein, expressed
LOC_Os11g16440OsAffx.18880.1.S1_at11/1111+9073304..9074159hypothetical protein
LOC_Os11g16450NANA11+9076526..9079245retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g16460OsAffx.31000.1.S1_at9/1111+9080626..90839352-oxoglutarate-dependent dioxygenase, putative
LOC_Os11g16470Os.9566.1.S1_x_at11/1111+9086375..9090648NB-ARC domain containing protein, expressed
LOC_Os11g16480Os.8755.1.S1_at10/1111+9091791..9096354transposon protein, putative, unclassified, expressed
LOC_Os11g16480Os.50840.1.S1_at1/1111+9091791..9096354transposon protein, putative, unclassified, expressed
LOC_Os11g16490Os.9566.1.S1_x_at3/1111+9106638..9107425hypothetical protein
LOC_Os11g16500NANA11+9112594..9112958hypothetical protein
LOC_Os11g16510NANA11+9114797..9115739disease resistance protein RPM1 homolog, putative
LOC_Os11g16520NANA11+9120037..9120285hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8755.1.S1_at--618--5911Chr11:9095408..9095432 (25 bp)
GAGCTCATCAAAATCGCAACCCAAG
LOC_Os11g16480
Os.8755.1.S1_at--885--7691Chr11:9095261..9095283 (23 bp)
GGGTCGTCAGGTTGTTCAACTCGGT
LOC_Os11g16480
Os.8755.1.S1_at--473--6751NONE
GTTCAACTCGGTAAGCAAGGCGCAG
NONE
Os.8755.1.S1_at--562--1531Chr11:9094040..9094064 (25 bp)
AGCAGGCCTTCCTCACAGAATTAAG
LOC_Os11g16480
Os.8755.1.S1_at--649--7091Chr11:9093998..9094022 (25 bp)
GTCAAAAGGGCAAGGCATCTTCCAA
LOC_Os11g16480
Os.8755.1.S1_at--64--4191Chr11:9092161..9092185 (25 bp)
CCCTACGCGAGACATACATGCTTGG
LOC_Os11g16480
Os.8755.1.S1_at--464--2091Chr11:9092150..9092174 (25 bp)
ACATACATGCTTGGGTCGAAATTGA
LOC_Os11g16480
Os.8755.1.S1_at--353--9051Chr11:9092018..9092039 (22 bp)
TGCAGACCTCTGATGTTGTGAATGA
LOC_Os11g16480
Os.8755.1.S1_at--786--2551Chr11:9091990..9092014 (25 bp)
AACGGAGATCCCTTTGGACGACTCT
LOC_Os11g16480
Os.8755.1.S1_at--863--8531Chr11:9091976..9092000 (25 bp)
TGGACGACTCTTCTGATGAGGAATA
LOC_Os11g16480
Os.8755.1.S1_at--393--151Chr11:9091918..9091942 (25 bp)
ATTTGGGACAATGTTCCTGTGCTTT
LOC_Os11g16480
Target Sequence 
GAGCTCATCAAAATCGCAACCCAAGGGGTCGTCAGGTTGTTCAACTCGGTAAGCAAGGCGCAGAATTGTCGGAAAGGTTT
GAACCCATCAAGGAGTAAAGACGCCAAAGTGTTGGCAAAAGANACAAAGCAGGCCTTCCTCACAGAATTAAGCAAAACAT
CTAACCAAAGTCAAAAGGGCAAGGCATCTTCCAACTTTTCTAAGAACAATAGCAAAGACGAAGACGAACCTGGGTGGGCA
CCCCTACGCGAGACATACATGCTTGGGTCGAAATTGAAAGATTGGGATAAAATGCAGACCTCTGATGTTGTGAATGAACA
AACGGAGATCCCTTTGGACGACTCTTCTGATGAGGAATANGCAATAGATTCACCTGAGTGAGTTGAAGCAGCATTTGGGA
CAATGTTCCTGTGCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8755.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis