Browse Element(s) Details


Os.50840.1.S1_at

Description gb:AK058910.1
DB_XREF= gi:32968928
TID=Os.50840.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50840 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-008-G06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-008-G06, full insert sequence.
FL= gb:AK058910.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2418410/11Beta-galactosidase precursor, putative, expressed
LOC_Os11g164801/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g24140OsAffx.31860.1.S1_at11/1112+13736781..13737740Protein kinase domain containing protein
LOC_Os12g24150OsAffx.7684.1.S1_at11/1112+13743785..13744213hypothetical protein
LOC_Os12g24160Os.49985.1.S1_at2/1112+13747297..13751274retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g24160OsAffx.17730.1.S1_at1/1112+13747297..13751274retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g24170Os.52193.1.S1_at11/1112+13758669..13761266Galactose binding lectin domain containing protein, expressed
LOC_Os12g24184Os.50840.1.S1_at10/1112+13762038..13779623Beta-galactosidase precursor, putative, expressed
LOC_Os12g24184OsAffx.29203.3.A1_x_at1/1112+13762038..13779623Beta-galactosidase precursor, putative, expressed
LOC_Os12g24200OsAffx.20387.1.S1_x_at1/1112+13788660..13791841retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g24210OsAffx.31069.5.S1_at5/1112+13792394..13796212retrotransposon protein, putative, unclassified
LOC_Os12g24210OsAffx.31069.5.S1_x_at3/1112+13792394..13796212retrotransposon protein, putative, unclassified
LOC_Os12g24220OsAffx.22355.1.S1_at1/1112+13799544..13804626retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0004565molecular_functionbeta-galactosidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50840.1.S1_at--210--271Chr12:13771866..13771890 (25 bp)
ATAGTTGGCCACTGAACAATGTTGT
LOC_Os12g24184
Os.50840.1.S1_at--792--10771Chr12:13771832..13771856 (25 bp)
TTGTTCCGTGGACTATTTCATATTG
LOC_Os12g24184
Os.50840.1.S1_at--580--2231Chr12:13771769..13771793 (25 bp)
ACAATGTATCACGTCTTCGACATCC
LOC_Os12g24184
Os.50840.1.S1_at--783--9351Chr12:13771753..13771777 (25 bp)
TCGACATCCCATTGTCTCCAATAAA
LOC_Os12g24184
Os.50840.1.S1_at--910--3431Chr12:13771636..13771660 (25 bp)
CAGATTACTGCAACTATTTTGTCGA
LOC_Os12g24184
Os.50840.1.S1_at--882--191Chr12:13771527..13771551 (25 bp)
ATTTGCTTGGCATGTTTTGGGCCCG
LOC_Os12g24184
Os.50840.1.S1_at--322--8651NONE
TGGGCCCGCCTGTTATACAGACATG
NONE
Os.50840.1.S1_at--587--5191Chr12:13771486..13771510 (25 bp)
GCAATACGTATGCTGGTGTAAGCCA
LOC_Os12g24184
Os.50840.1.S1_at--283--7451Chr12:13771471..13771495 (25 bp)
GTGTAAGCCAGGTCCACATGTCATA
LOC_Os12g24184
Os.50840.1.S1_at--696--1715Chr06:21373852..21373884 (25 bp)
ACCACTGCCTTAGCGCTGAGGCGTA
NONE
Os.50840.1.S1_at--1084--4033Chr06:2766311..2766334 (24 bp)
CGTTGCGACGCCTTATGAGATGATT
NONE
Target Sequence 
ATAGTTGGCCACTGAACAATGTTGTGTGAACAATTTGTTCCGTGGACTATTTCATATTGATTGGTGAGAAAGCAAATATT
TTAAAATACTCTATTCTACAATGTATCACGTCTTCGACATCCCATTGTCTCCAATAAACACCGCAAAAATTATTAAACTT
TTCATGATGAATCTAATGGCTCCATTTTCATACGAAAAGTTCTAAAGACCTTTTGATATGGAGTAAATTTCAGATTACTG
CAACTATTTTGTCGAAATTATCAATTTACTGCAACTTTATCTAGACATTTCAGAGAACTGTGACAATAGTGTATGATTTT
ATCAGAGAACTGCAATTTTATTTGCTTGGCATGTTTTGGGCCCGCCTGTTATACAGACATGCAATACGTATGCTGGTGTA
AGCCAGGTCCACATGTCATACACATGGGGGGTGGGGGGGGGGGCAGTGTTGTTAAGGCGGTAAGGCGGTTTAAGGCGACC
CACCACTGCCTTAGCGCTGAGGCGTAAGGCGTTGCGACGCCTTATGAGATGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50840.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis