Browse Element(s) Details


OsAffx.7123.1.S1_at

Description tigr:9639.m01483
TID=OsAffx.7123.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=diphthamide biosynthesis protein 2
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1643011/11diphthamide biosynthesis protein 2 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g16400Os.21454.1.S1_at1/1111+9043090..9046890expressed protein
LOC_Os11g16410Os.11370.1.S1_at10/1111+9051714..9056773oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os11g16420Os.24606.1.S1_at11/1111+9057133..9063300ProFAR isomerase associated family protein, expressed
LOC_Os11g16430OsAffx.7123.1.S1_at11/1111+9067434..9073083diphthamide biosynthesis protein 2 containing protein, expressed
LOC_Os11g16440OsAffx.18880.1.S1_at11/1111+9073304..9074159hypothetical protein
LOC_Os11g16450NANA11+9076526..9079245retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g16460OsAffx.31000.1.S1_at9/1111+9080626..90839352-oxoglutarate-dependent dioxygenase, putative
LOC_Os11g16470Os.9566.1.S1_x_at11/1111+9086375..9090648NB-ARC domain containing protein, expressed
LOC_Os11g16480Os.8755.1.S1_at10/1111+9091791..9096354transposon protein, putative, unclassified, expressed
LOC_Os11g16480Os.50840.1.S1_at1/1111+9091791..9096354transposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7123.1.S1_at--452--9771Chr11:9072532..9072556 (25 bp)
TAATGATGCAGTTCTTTACCAAGGA
LOC_Os11g16430
OsAffx.7123.1.S1_at--848--7171Chr11:9072565..9072589 (25 bp)
GTCTGCGATCGACTATCTCAAGGCA
LOC_Os11g16430
OsAffx.7123.1.S1_at--456--9971Chr11:9072596..9072620 (25 bp)
TACCGTGGTCTCACCGGAGAATACG
LOC_Os11g16430
OsAffx.7123.1.S1_at--71--5231Chr11:9072614..9072638 (25 bp)
GAATACGAGGGTCCAGCACCAGACT
LOC_Os11g16430
OsAffx.7123.1.S1_at--702--4351Chr11:9072632..9072656 (25 bp)
CCAGACTCGGTCTTGACAGGCAGAA
LOC_Os11g16430
OsAffx.7123.1.S1_at--124--8051Chr11:9072660..9072684 (25 bp)
GGAGAGCTGCCGGTTACAACAACGA
LOC_Os11g16430
OsAffx.7123.1.S1_at--503--231Chr11:9072747..9072771 (25 bp)
ATATTTGACTTGTTTGCCCTCGATG
LOC_Os11g16430
OsAffx.7123.1.S1_at--869--8731Chr11:9072812..9072836 (25 bp)
TGTCAGATGCCTCAGTTTTGTTGTG
LOC_Os11g16430
OsAffx.7123.1.S1_at--376--471Chr11:9072959..9072983 (25 bp)
ATCTCCTGCCAACATACTGTACAGT
LOC_Os11g16430
OsAffx.7123.1.S1_at--683--2271Chr11:9072997..9073021 (25 bp)
AAATCTGCAATTTGGTTCCTCTGTA
LOC_Os11g16430
OsAffx.7123.1.S1_at--1117--6691Chr11:9073011..9073035 (25 bp)
GTTCCTCTGTACCAAGGTGGCTGTA
LOC_Os11g16430
Target Sequence 
TAATGATGCAGTTCTTTACCAAGGAGGAGCAAAGTCTGCGATCGACTATCTCAAGGCACGATCCTACCGTGGTCTCACCG
GAGAATACGAGGGTCCAGCACCAGACTCGGTCTTGACAGGCAGAACAGGGAGAGCTGCCGGTTACAACAACGAGAAAAAG
GAGATTACACAGTGAATGAATGACATACCTTGAGTGGGAAAATATATATATATATATATTTGACTTGTTTGCCCTCGATG
GGCGATTGATGGAGAGGCAATTTTGTACTTCAGAAAGTACTGTCAGATGCCTCAGTTTTGTTGTGAGCCATGAACTATGT
GTTCCTTTTTTTTTTTCTTTTATGATGGAAGGGAAACTCCCCAGCCTCTGCTCCTACTAGGGAACTGTGTTTCATCAAAC
TGTTATATGTTCAGAACGATGTTGTACATCTCCTGCCAACATACTGTACAGTATTCCATATTTGCAAATCTGCAATTTGG
TTCCTCTGTACCAAGGTGGCTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7123.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis