Browse Element(s) Details


OsAffx.30341.1.S1_at

Description tigr:9638.m00734
TID=OsAffx.30341.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g086409/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g08570OsAffx.18174.1.S1_at10/1110+4421729..4427909RNA recognition motif family protein, expressed
LOC_Os10g08570Os.10084.3.S1_at1/1110+4421729..4427909RNA recognition motif family protein, expressed
LOC_Os10g08580Os.46278.1.S1_a_at11/1110+4429249..4433064Deoxyribodipyrimidine photo-lyase, putative, expressed
LOC_Os10g08590OsAffx.8457.1.S1_at11/1110+4434863..4436227hypothetical protein
LOC_Os10g08599NANA10+4437906..4438695NA
LOC_Os10g08610OsAffx.20714.2.S1_at11/1110+4441023..4444375hypothetical protein
LOC_Os10g08610OsAffx.20714.1.S1_s_at11/1110+4441023..4444375hypothetical protein
LOC_Os10g08610OsAffx.20714.1.S1_at10/1110+4441023..4444375hypothetical protein
LOC_Os10g08620OsAffx.20713.1.S1_at11/1110+4446991..4448967Chalcone synthase 8, putative
LOC_Os10g08630OsAffx.18176.1.S1_at10/1110+4449202..4451362hypothetical protein
LOC_Os10g08630OsAffx.18176.2.S1_at2/1110+4449202..4451362hypothetical protein
LOC_Os10g08640OsAffx.30341.1.S1_x_at10/1110+4451733..4452535hypothetical protein
LOC_Os10g08640OsAffx.30341.1.S1_at9/1110+4451733..4452535hypothetical protein
LOC_Os10g08640Os.9028.1.S1_at2/1110+4451733..4452535hypothetical protein
LOC_Os10g08650OsAffx.8455.1.S1_at11/1110+4454043..4456140transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g08660Os.39476.1.S1_at11/1110+4456787..4462132transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g08660OsAffx.8589.1.S1_at1/1110+4456787..4462132transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g08670OsAffx.30342.1.S1_at11/1110+4466349..4467881Chalcone and stilbene synthases, N-terminal domain containing protein
LOC_Os10g08680OsAffx.8454.1.S1_at10/1110+4475208..4480054hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30341.1.S1_at--345--3731Chr10:4451782..4451806 (25 bp)
CTACTGCCAAGGGTGGCGGCGTCCA
LOC_Os10g08640
OsAffx.30341.1.S1_at--1131--4692Chr10:4451815..4451839 (25 bp)
GCGGCCGACTTAATCACCACCCTCT
LOC_Os10g08640
OsAffx.30341.1.S1_at--351--9311Chr10:4451839..4452311 (25 bp)
TCCCGCCGTTGCTCGAGATGGCTAT
LOC_Os10g08640
OsAffx.30341.1.S1_at--483--4211NONE
CCGCCGTTGCTCGAGATGGCTATGA
NONE
OsAffx.30341.1.S1_at--996--4231NONE
CCGTTGCTCGAGATGGCTATGAGAA
NONE
OsAffx.30341.1.S1_at--1121--2051Chr10:4452468..4452492 (25 bp)
ACTTCGTCGGCTCCATGTCGATTTG
LOC_Os10g08640
OsAffx.30341.1.S1_at--269--10631Chr10:4452470..4452494 (25 bp)
TTCGTCGGCTCCATGTCGATTTGTT
LOC_Os10g08640
OsAffx.30341.1.S1_at--957--7171Chr10:4452473..4452497 (25 bp)
GTCGGCTCCATGTCGATTTGTTTTA
LOC_Os10g08640
OsAffx.30341.1.S1_at--587--3931Chr10:4452475..4452499 (25 bp)
CGGCTCCATGTCGATTTGTTTTATT
LOC_Os10g08640
OsAffx.30341.1.S1_at--784--8311Chr10:4452476..4452500 (25 bp)
GGCTCCATGTCGATTTGTTTTATTG
LOC_Os10g08640
OsAffx.30341.1.S1_at--409--4791Chr10:4452477..4452501 (25 bp)
GCTCCATGTCGATTTGTTTTATTGG
LOC_Os10g08640
Target Sequence 
CTACTGCCAAGGGTGGCGGCGTCCAGGCGACGGGCGGCCGACTTAATCACCACCCTCTCCCGCCGTTGCTCGAGATGGCT
ATGAGAATGCCTCTCCAGACGGCCGTGGTGACAGATATCTGTCGACAGGGAGGACTTGAGAATATGCAGCACTTCGTCGG
CTCCATGTCGATTTGTTTTATTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30341.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis