Browse Element(s) Details


Os.46278.1.S1_a_at

Description gb:AK111418.1
DB_XREF= gi:32996627
TID=Os.46278.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46278 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative CPD photolyase (OSJNAb0015J03.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-182-G05, full insert sequence.
FL= gb:AB096003.1 gb:AK111418.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0858011/11Deoxyribodipyrimidine photo-lyase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g08550Os.2232.1.S1_a_at11/1110+4405766..4410384Enolase, putative, expressed
LOC_Os10g08550Os.2232.3.S1_x_at11/1110+4405766..4410384Enolase, putative, expressed
LOC_Os10g08550Os.57462.1.S1_x_at4/1110+4405766..4410384Enolase, putative, expressed
LOC_Os10g08560Os.27691.2.S1_x_at11/1110+4419535..4420535retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g08560Os.27691.2.S1_at11/1110+4419535..4420535retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g08570OsAffx.18174.1.S1_at10/1110+4421729..4427909RNA recognition motif family protein, expressed
LOC_Os10g08570Os.10084.3.S1_at1/1110+4421729..4427909RNA recognition motif family protein, expressed
LOC_Os10g08580Os.46278.1.S1_a_at11/1110+4429249..4433064Deoxyribodipyrimidine photo-lyase, putative, expressed
LOC_Os10g08590OsAffx.8457.1.S1_at11/1110+4434863..4436227hypothetical protein
LOC_Os10g08599NANA10+4437906..4438695NA
LOC_Os10g08610OsAffx.20714.2.S1_at11/1110+4441023..4444375hypothetical protein
LOC_Os10g08610OsAffx.20714.1.S1_s_at11/1110+4441023..4444375hypothetical protein
LOC_Os10g08610OsAffx.20714.1.S1_at10/1110+4441023..4444375hypothetical protein
LOC_Os10g08620OsAffx.20713.1.S1_at11/1110+4446991..4448967Chalcone synthase 8, putative
LOC_Os10g08630OsAffx.18176.1.S1_at10/1110+4449202..4451362hypothetical protein
LOC_Os10g08630OsAffx.18176.2.S1_at2/1110+4449202..4451362hypothetical protein
LOC_Os10g08640OsAffx.30341.1.S1_x_at10/1110+4451733..4452535hypothetical protein
LOC_Os10g08640OsAffx.30341.1.S1_at9/1110+4451733..4452535hypothetical protein
LOC_Os10g08640Os.9028.1.S1_at2/1110+4451733..4452535hypothetical protein
LOC_Os10g08650OsAffx.8455.1.S1_at11/1110+4454043..4456140transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g08660Os.39476.1.S1_at11/1110+4456787..4462132transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g08660OsAffx.8589.1.S1_at1/1110+4456787..4462132transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0000719biological_processphotoreactive repair
GO:0009650biological_processUV protection
GO:0003913molecular_functionDNA photolyase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46278.1.S1_a_at--155--8691Chr10:4430527..4430551 (25 bp)
TGTACTGGGCCAAAAAGATTCTAGA
LOC_Os10g08580
Os.46278.1.S1_a_at--1079--5371Chr10:4430486..4430510 (25 bp)
GAAGAAGCACTTTCAACTGCAATTT
LOC_Os10g08580
Os.46278.1.S1_a_at--248--10131Chr10:4429813..4429837 (25 bp)
TATGAGATAGATGGCAGGGACCCCA
LOC_Os10g08580
Os.46278.1.S1_a_at--568--1791Chr10:4429794..4429818 (25 bp)
ACCCCAGTGGTTACGTCGGATGTAT
LOC_Os10g08580
Os.46278.1.S1_a_at--1075--6911Chr10:4429773..4429797 (25 bp)
GTATGTGGTCCATATGTGGCCTCCA
LOC_Os10g08580
Os.46278.1.S1_a_at--799--4031Chr10:4429591..4429615 (25 bp)
CGTTACATGAATTACGCTGGCTGCA
LOC_Os10g08580
Os.46278.1.S1_a_at--874--1391Chr10:4429564..4429588 (25 bp)
AGAAAATTCGATGTTGACGCTTACA
LOC_Os10g08580
Os.46278.1.S1_a_at--434--5791Chr10:4429549..4429573 (25 bp)
GACGCTTACATTTCTTATGTCAAGA
LOC_Os10g08580
Os.46278.1.S1_a_at--264--2791Chr10:4429504..4429528 (25 bp)
AAGAGGAACGCTGAGGAGTCTCCAA
LOC_Os10g08580
Os.46278.1.S1_a_at--749--6091Chr10:4429489..4429513 (25 bp)
GAGTCTCCAAATCCTGTAGTCAAGC
LOC_Os10g08580
Os.46278.1.S1_a_at--603--3031Chr10:4429480..4429504 (25 bp)
AATCCTGTAGTCAAGCTTTCCAAGT
LOC_Os10g08580
Target Sequence 
TGTACTGGGCCAAAAAGATTCTAGAATGGACTAGTGGACCAGAAGAAGCACTTTCAACTGCAATTTATTTAAATGACAAG
TATGAGATAGATGGCAGGGACCCCAGTGGTTACGTCGGATGTATGTGGTCCATATGTGGCCTCCATGATCAGGGTTGGAA
GGAGCGTCCAGTATTTGGAAAGATACGTTACATGAATTACGCTGGCTGCAAGAGAAAATTCGATGTTGACGCTTACATTT
CTTATGTCAAGAGATTAGCTGGTCAATCCAAGAAGAGGAACGCTGAGGAGTCTCCAAATCCTGTAGTCAAGCTTTCCAAG
T

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46278.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis