Browse Element(s) Details


OsAffx.30342.1.S1_at

Description tigr:9638.m00737
TID=OsAffx.30342.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Chalcone and stilbene synthases, N-terminal domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0867011/11Chalcone and stilbene synthases, N-terminal domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g08610OsAffx.20714.2.S1_at11/1110+4441023..4444375hypothetical protein
LOC_Os10g08610OsAffx.20714.1.S1_s_at11/1110+4441023..4444375hypothetical protein
LOC_Os10g08610OsAffx.20714.1.S1_at10/1110+4441023..4444375hypothetical protein
LOC_Os10g08620OsAffx.20713.1.S1_at11/1110+4446991..4448967Chalcone synthase 8, putative
LOC_Os10g08630OsAffx.18176.1.S1_at10/1110+4449202..4451362hypothetical protein
LOC_Os10g08630OsAffx.18176.2.S1_at2/1110+4449202..4451362hypothetical protein
LOC_Os10g08640OsAffx.30341.1.S1_x_at10/1110+4451733..4452535hypothetical protein
LOC_Os10g08640OsAffx.30341.1.S1_at9/1110+4451733..4452535hypothetical protein
LOC_Os10g08640Os.9028.1.S1_at2/1110+4451733..4452535hypothetical protein
LOC_Os10g08650OsAffx.8455.1.S1_at11/1110+4454043..4456140transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g08660Os.39476.1.S1_at11/1110+4456787..4462132transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g08660OsAffx.8589.1.S1_at1/1110+4456787..4462132transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g08670OsAffx.30342.1.S1_at11/1110+4466349..4467881Chalcone and stilbene synthases, N-terminal domain containing protein
LOC_Os10g08680OsAffx.8454.1.S1_at10/1110+4475208..4480054hypothetical protein
LOC_Os10g08690OsAffx.20711.1.S1_x_at11/1110+4480751..4480996retrotransposon protein, putative, unclassified
LOC_Os10g08696Os.45173.1.S1_x_at3/1110+4481739..4483757retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g08702NANA10+4484046..4488360retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g08710OsAffx.20709.1.S1_at11/1110+4491444..4492361Chalcone and stilbene synthases, N-terminal domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0009699biological_processphenylpropanoid biosynthesis
GO:0009715biological_processchalcone biosynthesis
GO:0009813biological_processflavonoid biosynthesis
GO:0009926biological_processauxin polar transport
GO:0005634cellular_componentnucleus
GO:0005783cellular_componentendoplasmic reticulum
GO:0009705cellular_componentvacuolar membrane (sensu Magnoliophyta)
GO:0016210molecular_functionnaringenin-chalcone synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30342.1.S1_at--216--8571Chr10:4467286..4467310 (25 bp)
TGGTATGTTTTTCCACCCCTAATGA
LOC_Os10g08670
OsAffx.30342.1.S1_at--332--8471Chr10:4467344..4467368 (25 bp)
TGGCGCTGGCGCTATCATTGTCGGT
LOC_Os10g08670
OsAffx.30342.1.S1_at--987--411Chr10:4467357..4467381 (25 bp)
ATCATTGTCGGTGCGGGCTCCTTGG
LOC_Os10g08670
OsAffx.30342.1.S1_at--914--8911Chr10:4467389..4467413 (25 bp)
TGAGCGCCCGCTATTCAAGATGGTA
LOC_Os10g08670
OsAffx.30342.1.S1_at--468--10511Chr10:4467402..4467426 (25 bp)
TTCAAGATGGTAGCTGCCTCGCAGA
LOC_Os10g08670
OsAffx.30342.1.S1_at--758--8271Chr10:4467456..4467480 (25 bp)
GGCATGCAGGCCACTGATAGCGGCA
LOC_Os10g08670
OsAffx.30342.1.S1_at--542--2491Chr10:4467532..4467556 (25 bp)
AACAGACTTTGCTCGATACCTTTCG
LOC_Os10g08670
OsAffx.30342.1.S1_at--490--6491Chr10:4467546..4467570 (25 bp)
GATACCTTTCGATCGGTCGGAAATA
LOC_Os10g08670
OsAffx.30342.1.S1_at--32--7071Chr10:4467643..4467667 (25 bp)
GTAAGCTCCAGCTGCAACCATGGAA
LOC_Os10g08670
OsAffx.30342.1.S1_at--1118--5151Chr10:4467675..4467699 (25 bp)
GCAAGCCGTCAAGTGTTGCACGATT
LOC_Os10g08670
OsAffx.30342.1.S1_at--259--5611Chr10:4467719..4467743 (25 bp)
GACAATCGCGTTCGTGCTTGATGAA
LOC_Os10g08670
Target Sequence 
TGGTATGTTTTTCCACCCCTAATGAAAGCAAAATTGTTGGCCATGGACTATTTGGAGATGGCGCTGGCGCTATCATTGTC
GGTGCGGGCTCCTTGGCCGATGGTGAGCGCCCGCTATTCAAGATGGTAGCTGCCTCGCAGACCACAATACCAGGAACCGG
GCACGCACTTGGCATGCAGGCCACTGATAGCGGCATAGATTTCCACCTGTCCATCCAGGTGCCGACATTGATCAAGGATA
ACATCCAACAGACTTTGCTCGATACCTTTCGATCGGTCGGAAATAACAATCCTAACTGGAACGACCTCTTCTGGGCAGTG
CACCCCGGCGGCCGCGCAATCCTCGACAACATAGAGGGTAAGCTCCAGCTGCAACCATGGAAGCTTGCGGCAAGCCGTCA
AGTGTTGCACGATTACGGGAACATGAGTGGTGCGACAATCGCGTTCGTGCTTGATGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30342.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis