Browse Element(s) Details


OsAffx.20709.1.S1_at

Description tigr:9638.m00741
TID=OsAffx.20709.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Chalcone and stilbene synthases, N-terminal domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0871011/11Chalcone and stilbene synthases, N-terminal domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g08670OsAffx.30342.1.S1_at11/1110+4466349..4467881Chalcone and stilbene synthases, N-terminal domain containing protein
LOC_Os10g08680OsAffx.8454.1.S1_at10/1110+4475208..4480054hypothetical protein
LOC_Os10g08690OsAffx.20711.1.S1_x_at11/1110+4480751..4480996retrotransposon protein, putative, unclassified
LOC_Os10g08696Os.45173.1.S1_x_at3/1110+4481739..4483757retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g08702NANA10+4484046..4488360retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g08710OsAffx.20709.1.S1_at11/1110+4491444..4492361Chalcone and stilbene synthases, N-terminal domain containing protein
LOC_Os10g08720OsAffx.30343.1.S1_at10/1110+4499057..4499606hypothetical protein
LOC_Os10g08730OsAffx.30344.1.S1_at11/1110+4501843..4503268hypothetical protein
LOC_Os10g08740Os.2987.3.S1_x_at1/1110+4504225..4507966retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g08750NANA10+4509887..4510673hypothetical protein
LOC_Os10g08760OsAffx.30345.1.S1_at11/1110+4514354..4514626hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009699biological_processphenylpropanoid biosynthesis
GO:0009715biological_processchalcone biosynthesis
GO:0009813biological_processflavonoid biosynthesis
GO:0009926biological_processauxin polar transport
GO:0005634cellular_componentnucleus
GO:0005783cellular_componentendoplasmic reticulum
GO:0009705cellular_componentvacuolar membrane (sensu Magnoliophyta)
GO:0016210molecular_functionnaringenin-chalcone synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20709.1.S1_at--65--4091Chr10:4491755..4491779 (25 bp)
CGAGCTGACCCTGATATGTTTCTCA
LOC_Os10g08710
OsAffx.20709.1.S1_at--1001--6831Chr10:4491772..4491796 (25 bp)
GTTTCTCAGCCCCTGATGAAAGCAA
LOC_Os10g08710
OsAffx.20709.1.S1_at--609--1651Chr10:4491871..4491895 (25 bp)
AGCGCCCATTGTTCGAGATGGTCGC
LOC_Os10g08710
OsAffx.20709.1.S1_at--972--971Chr10:4492012..4492036 (25 bp)
AGGAGAGCTTGCTCCATTCATTCTG
LOC_Os10g08710
OsAffx.20709.1.S1_at--631--4311Chr10:4492025..4492049 (25 bp)
CCATTCATTCTGTTCGGTCGGAAAC
LOC_Os10g08710
OsAffx.20709.1.S1_at--527--7551Chr10:4492093..4492117 (25 bp)
GTGGCCGCATGATCCTTGACAACAT
LOC_Os10g08710
OsAffx.20709.1.S1_at--135--2851Chr10:4492157..4492181 (25 bp)
AAGTCGTCAAGTTCTACGTGAGTAC
LOC_Os10g08710
OsAffx.20709.1.S1_at--655--3951Chr10:4492181..4492205 (25 bp)
CGGAAACATGAGTGGCGCGACGATT
LOC_Os10g08710
OsAffx.20709.1.S1_at--515--4151Chr10:4492196..4492220 (25 bp)
CGCGACGATTGCGTTTGTTCTTGAT
LOC_Os10g08710
OsAffx.20709.1.S1_at--580--8971Chr10:4492220..4492244 (25 bp)
TGAACTACGCCAGTGTCGGGAGAAG
LOC_Os10g08710
OsAffx.20709.1.S1_at--253--10231Chr10:4492307..4492331 (25 bp)
TATTGAGACAATGATCCTGCGTAAC
LOC_Os10g08710
Target Sequence 
CGAGCTGACCCTGATATGTTTCTCAGCCCCTGATGAAAGCAAAATTGTCGGGCATGGACTATTCGGGGATGGCGCTGGTG
CAATCATCGTTGGCGCAGGCCCCTTGGCTGATGGCGAGCGCCCATTGTTCGAGATGGTCGCTGCCTCCCAGACCACGATA
CCAGGAACAGAGAACGCACTTGGCATGCAGGCCACTAGCAGCGGCATAGATTTCCACATCTCCATCCAGCTGCCGACGCT
GATCAGGGATAACATCCAGGAGAGCTTGCTCCATTCATTCTGTTCGGTCGGAAACACAGATCCTAAATGGAACGACCTCT
TCTGGGCGGTACACCCCGGTGGCCGCATGATCCTTGACAACATAGAGGCAAGTCGTCAAGTTCTACGTGAGTACGGAAAC
ATGAGTGGCGCGACGATTGCGTTTGTTCTTGATGAACTACGCCAGTGTCGGGAGAAGGAAAAACAAGAGCCAGAACAGCC
TGAATGGGGAGTGATGCTGGCCTTTGGACCAGGGATCACTATTGAGACAATGATCCTGCGTAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20709.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis