Browse Element(s) Details


OsAffx.20711.1.S1_x_at

Description gb:NM_195045.1
DB_XREF= gi:37531449
TID=OsAffx.20711.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNAb0015J03.22), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0869011/11retrotransposon protein, putative, unclassified
LOC_Os04g054901/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g08650OsAffx.8455.1.S1_at11/1110+4454043..4456140transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g08660Os.39476.1.S1_at11/1110+4456787..4462132transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g08660OsAffx.8589.1.S1_at1/1110+4456787..4462132transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g08670OsAffx.30342.1.S1_at11/1110+4466349..4467881Chalcone and stilbene synthases, N-terminal domain containing protein
LOC_Os10g08680OsAffx.8454.1.S1_at10/1110+4475208..4480054hypothetical protein
LOC_Os10g08690OsAffx.20711.1.S1_x_at11/1110+4480751..4480996retrotransposon protein, putative, unclassified
LOC_Os10g08696Os.45173.1.S1_x_at3/1110+4481739..4483757retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g08702NANA10+4484046..4488360retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g08710OsAffx.20709.1.S1_at11/1110+4491444..4492361Chalcone and stilbene synthases, N-terminal domain containing protein
LOC_Os10g08720OsAffx.30343.1.S1_at10/1110+4499057..4499606hypothetical protein
LOC_Os10g08730OsAffx.30344.1.S1_at11/1110+4501843..4503268hypothetical protein
LOC_Os10g08740Os.2987.3.S1_x_at1/1110+4504225..4507966retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20711.1.S1_x_at--556--7578Chr04:10560941..10560961 (21 bp)
GGGCGTGCAAGCTCGCCGGCGGCAA
NONE
OsAffx.20711.1.S1_x_at--1144--9312Chr10:4480923..4480947 (25 bp)
TCGCCGGCGGCAACCTTCGGGTTGA
LOC_Os10g08690
OsAffx.20711.1.S1_x_at--982--4672Chr11:14598672..14598691 (20 bp)
GCGGTGCTCCGGTGGTCTACAGCAA
NONE
OsAffx.20711.1.S1_x_at--1143--7772Chr10:4489326..4489350 (25 bp)
GGTGCTCCGGTGGTCTACAGCAACG
NONE
OsAffx.20711.1.S1_x_at--710--7312Chr10:4489325..4489349 (25 bp)
GTGCTCCGGTGGTCTACAGCAACGA
NONE
OsAffx.20711.1.S1_x_at--677--9092Chr10:4489324..4489348 (25 bp)
TGCTCCGGTGGTCTACAGCAACGAT
NONE
OsAffx.20711.1.S1_x_at--83--4792Chr10:4489323..4489347 (25 bp)
GCTCCGGTGGTCTACAGCAACGATG
NONE
OsAffx.20711.1.S1_x_at--221--9292Chr10:4489321..4489345 (25 bp)
TCCGGTGGTCTACAGCAACGATGGA
NONE
OsAffx.20711.1.S1_x_at--493--42518Chr12:23192044..23192063 (20 bp)
CCGGTGGTCTACAGCAACGATGGAG
NONE
OsAffx.20711.1.S1_x_at--802--7736Chr07:25830763..25830784 (22 bp)
GGTGGTCTACAGCAACGATGGAGGG
NONE
OsAffx.20711.1.S1_x_at--581--9512Chr07:25830765..25830786 (22 bp)
TCTACAGCAACGATGGAGGGGCCGA
NONE
Target Sequence 
GGGCGTGCAAGCTCGCCGGCGGCAACCTTCGGGTTGACGACGACGGCGGTGCTCCGGTGGTCTACAGCAACGATGGAGGG
GCCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20711.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis