Browse Element(s) Details


OsAffx.27108.2.S1_at

Description tigr:9633.m02890
TID=OsAffx.27108.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3164011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g31610OsAffx.14903.1.S1_at11/115+18315706..18320034Leucine Rich Repeat family protein, expressed
LOC_Os05g31620Os.10058.1.S1_at10/115+18325341..18326315EF hand family protein, expressed
LOC_Os05g31630OsAffx.26950.1.S1_at6/115+18336756..18342100transposon protein, putative, Mutator sub-class
LOC_Os05g31630OsAffx.24493.1.S1_at1/115+18336756..18342100transposon protein, putative, Mutator sub-class
LOC_Os05g31630OsAffx.16522.1.S1_at1/115+18336756..18342100transposon protein, putative, Mutator sub-class
LOC_Os05g31640OsAffx.27108.2.S1_s_at11/115+18342383..18343544hypothetical protein
LOC_Os05g31640OsAffx.27108.2.S1_at11/115+18342383..18343544hypothetical protein
LOC_Os05g31650OsAffx.14904.1.S1_at11/115+18344865..18345278hypothetical protein
LOC_Os05g31660OsAffx.27109.1.S1_at10/115+18346870..18347692expressed protein
LOC_Os05g31670Os.11260.1.S1_at11/115+18348218..18349149plasma membrane associated protein, putative, expressed
LOC_Os05g31680Os.27416.1.S1_at6/115+18352170..18356265expressed protein
LOC_Os05g31690Os.55351.1.S1_at11/115+18367037..18370882expressed protein
LOC_Os05g31690Os.25394.1.A1_at11/115+18367037..18370882expressed protein
LOC_Os05g31690Os.55351.1.S1_x_at8/115+18367037..18370882expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27108.2.S1_at--479--9531Chr05:18343490..18343514 (25 bp)
TCTACCCGTGAGTCGAAGGCATATC
LOC_Os05g31640
OsAffx.27108.2.S1_at--1146--9951Chr05:18343488..18343512 (25 bp)
TACCCGTGAGTCGAAGGCATATCCC
LOC_Os05g31640
OsAffx.27108.2.S1_at--347--8891Chr05:18343482..18343506 (25 bp)
TGAGTCGAAGGCATATCCCGTGCCT
LOC_Os05g31640
OsAffx.27108.2.S1_at--352--931Chr05:18343474..18343498 (25 bp)
AGGCATATCCCGTGCCTTATCGGGT
LOC_Os05g31640
OsAffx.27108.2.S1_at--47--10151Chr05:18343469..18343493 (25 bp)
TATCCCGTGCCTTATCGGGTTGGTC
LOC_Os05g31640
OsAffx.27108.2.S1_at--763--1111Chr05:18343425..18343449 (25 bp)
AGTGATGTGCCGATGCCGTCCACCA
LOC_Os05g31640
OsAffx.27108.2.S1_at--23--8091Chr05:18342643..18342667 (25 bp)
GGAGCTAGTGCATCTATTGTAGCAA
LOC_Os05g31640
OsAffx.27108.2.S1_at--331--7332Chr12:4323142..4323165 (24 bp)
GTGCATCTATTGTAGCAACATATGA
NONE
OsAffx.27108.2.S1_at--611--5151Chr05:18342596..18342646 (25 bp)
GCAACATATGAAACATCCAGTCAGG
LOC_Os05g31640
OsAffx.27108.2.S1_at--30--8971Chr05:18342588..18342611 (24 bp)
TGAAACATCCAGTCAGGGAGCAAAT
LOC_Os05g31640
OsAffx.27108.2.S1_at--885--551Chr05:18342582..18342606 (25 bp)
ATCCAGTCAGGGAGCAAATGGTCCT
LOC_Os05g31640
Target Sequence 
TCTACCCGTGAGTCGAAGGCATATCCCGTGCCTTATCGGGTTGGTCCGCTAGAATATCAGCCCGCAGTGATGTGCCGATG
CCGTCCACCAGCCAAGGCGGCGAGGTGGATCTCGTGGAGCACGGACAACCCTGGGCGCCGGTATTACAAGTGCCAAAACG
CTCGGGGTTTGAAGTGGGGTTTTTTCTTGCAGCAAGGGGGGTGTGATTTCTGGGCATGGTACGACGGGCCGACGTCAAGC
TTCATCAGGGAGCTCTTGAATGATTTGCGGGACAGGGTGAATTCGTTGAGGAGGGAGAACGAAGTGATGCGAAAGGAGGT
CGACCAGAGTCGGGATAAGGTGGAAGTACAGAGTACAGTGATAGATGATGCTCGTGGTGTGGTTGCTGTGAAGAATGCAG
AAATTATGTGCTTGAAGGCCAGGAATCATAAGTTAGAGAAGGAAAGAAAAAAGGGAGCTAGTGCATCTATTGTAGCAACA
TATGAAACATCCAGTCAGGGAGCAAATGGTCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27108.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis