Browse Element(s) Details


OsAffx.14903.1.S1_at

Description tigr:9633.m02887
TID=OsAffx.14903.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Leucine Rich Repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3161011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g31570Os.50205.2.S1_at10/115+18295956..18301673NB-ARC domain containing protein, expressed
LOC_Os05g31570Os.50205.1.S1_x_at5/115+18295956..18301673NB-ARC domain containing protein, expressed
LOC_Os05g31580OsAffx.14902.1.S1_at11/115+18304654..18305241hypothetical protein
LOC_Os05g31590OsAffx.27107.1.S1_at10/115+18309141..18310349hypothetical protein
LOC_Os05g31600Os.54849.1.S1_at11/115+18310739..18314902retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os05g31610OsAffx.14903.1.S1_at11/115+18315706..18320034Leucine Rich Repeat family protein, expressed
LOC_Os05g31620Os.10058.1.S1_at10/115+18325341..18326315EF hand family protein, expressed
LOC_Os05g31630OsAffx.26950.1.S1_at6/115+18336756..18342100transposon protein, putative, Mutator sub-class
LOC_Os05g31630OsAffx.24493.1.S1_at1/115+18336756..18342100transposon protein, putative, Mutator sub-class
LOC_Os05g31630OsAffx.16522.1.S1_at1/115+18336756..18342100transposon protein, putative, Mutator sub-class
LOC_Os05g31640OsAffx.27108.2.S1_s_at11/115+18342383..18343544hypothetical protein
LOC_Os05g31640OsAffx.27108.2.S1_at11/115+18342383..18343544hypothetical protein
LOC_Os05g31650OsAffx.14904.1.S1_at11/115+18344865..18345278hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14903.1.S1_at--249--211Chr05:18319551..18319575 (25 bp)
ATTTGCCACTGCCAATCATATTGCC
LOC_Os05g31610
OsAffx.14903.1.S1_at--201--9791Chr05:18319580..18319604 (25 bp)
TAACTCTTTCCGATACTTGCCTGAA
LOC_Os05g31610
OsAffx.14903.1.S1_at--1010--7751Chr05:18319609..18319633 (25 bp)
GGTGATCTACAAATCCTCGCGAAGA
LOC_Os05g31610
OsAffx.14903.1.S1_at--335--3911Chr05:18319647..18319671 (25 bp)
CTGGCTACTGCTCTTGGACAAATCT
LOC_Os05g31610
OsAffx.14903.1.S1_at--902--2391Chr05:18319720..18319744 (25 bp)
AAACATCTTACTATCACGTGCTCCA
LOC_Os05g31610
OsAffx.14903.1.S1_at--962--2511Chr05:18319759..18319783 (25 bp)
AACTTCGCCAAGGAATCTGCCTGTA
LOC_Os05g31610
OsAffx.14903.1.S1_at--493--1451Chr05:18319790..18319814 (25 bp)
AGAAGATTACCTGGTCCTTCACCGA
LOC_Os05g31610
OsAffx.14903.1.S1_at--1060--4071Chr05:18319812..18319836 (25 bp)
CGAGCTAGAGTCTCTCTCTGGAATT
LOC_Os05g31610
OsAffx.14903.1.S1_at--440--8211Chr05:18319831..18319855 (25 bp)
GGAATTGACAACCTCCCGGAATTGA
LOC_Os05g31610
OsAffx.14903.1.S1_at--213--5151Chr05:18319874..18319898 (25 bp)
GCAAAAGTGTCCCTCTTCAAGTGTG
LOC_Os05g31610
OsAffx.14903.1.S1_at--293--971Chr05:18319965..18319989 (25 bp)
AGGAGGACCGACACTAGCTAACAAG
LOC_Os05g31610
Target Sequence 
ATTTGCCACTGCCAATCATATTGCCAAGGTAACTCTTTCCGATACTTGCCTGAAGCAAGGTGATCTACAAATCCTCGCGA
AGAAACCAAAATTGTGCTGGCTACTGCTCTTGGACAAATCTTATGACGAAAGCCATCTTACCTTCAACAAAGATGAGTTT
CCCAAGCTCAAACATCTTACTATCACGTGCTCCAAGATCTCGGGCATCAACTTCGCCAAGGAATCTGCCTGTAAGCTTGA
GAAGATTACCTGGTCCTTCACCGAGCTAGAGTCTCTCTCTGGAATTGACAACCTCCCGGAATTGAAGGAGCTTGAGTTAG
AAGGCAAAAGTGTCCCTCTTCAAGTGTGGAGAGATATCAATGCACATAACAAGAAACTTATACACAAGAGAACACAGGTT
CAGGATGAACCAAAAGGAGGACCGACACTAGCTAACAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14903.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis