Browse Element(s) Details


OsAffx.27107.1.S1_at

Description tigr:9633.m02885
TID=OsAffx.27107.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3159010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g31570Os.50205.2.S1_at10/115+18295956..18301673NB-ARC domain containing protein, expressed
LOC_Os05g31570Os.50205.1.S1_x_at5/115+18295956..18301673NB-ARC domain containing protein, expressed
LOC_Os05g31580OsAffx.14902.1.S1_at11/115+18304654..18305241hypothetical protein
LOC_Os05g31590OsAffx.27107.1.S1_at10/115+18309141..18310349hypothetical protein
LOC_Os05g31600Os.54849.1.S1_at11/115+18310739..18314902retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os05g31610OsAffx.14903.1.S1_at11/115+18315706..18320034Leucine Rich Repeat family protein, expressed
LOC_Os05g31620Os.10058.1.S1_at10/115+18325341..18326315EF hand family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27107.1.S1_at--935--21910Chr11:18956329..18956351 (23 bp)
ACAAAAACACATACCTTCATGATCT
NONE
OsAffx.27107.1.S1_at--355--9492Chr09:7137534..7137845 (25 bp)
TCTCCATGTTCTCAAATTAGATTTG
NONE
OsAffx.27107.1.S1_at--993--2511Chr05:18309882..18309906 (25 bp)
AACTTACAAGCGGTTGATGCCCTCC
LOC_Os05g31590
OsAffx.27107.1.S1_at--475--7531Chr05:18309958..18309982 (25 bp)
GTGGCGTCAACTCGCGCTTCACCAG
LOC_Os05g31590
OsAffx.27107.1.S1_at--291--10811Chr05:18310014..18310038 (25 bp)
TTGTCGTCCTTCACCTCGGTGAGGA
LOC_Os05g31590
OsAffx.27107.1.S1_at--123--3371Chr05:18310025..18310049 (25 bp)
CACCTCGGTGAGGAACACGCTAGTT
LOC_Os05g31590
OsAffx.27107.1.S1_at--658--2451Chr05:18310038..18310062 (25 bp)
AACACGCTAGTTCTCAAGGAGCTTT
LOC_Os05g31590
OsAffx.27107.1.S1_at--877--2911Chr05:18310053..18310077 (25 bp)
AAGGAGCTTTGCAACGCCAATTCCG
LOC_Os05g31590
OsAffx.27107.1.S1_at--479--3151Chr05:18310071..18310095 (25 bp)
AATTCCGTGCAGGTCCAGTCCGAGA
LOC_Os05g31590
OsAffx.27107.1.S1_at--474--1031Chr05:18310081..18310105 (25 bp)
AGGTCCAGTCCGAGAATGCCCTCGT
LOC_Os05g31590
OsAffx.27107.1.S1_at--365--811Chr05:18310282..18310306 (25 bp)
ATGGTGGACAGAACAACGGCGGCAA
LOC_Os05g31590
Target Sequence 
ACAAAAACACATACCTTCATGATCTCCATGTTCTCAAATTAGATTTGTCATTAATCACCAAAACCAAATTAAGGCACTTG
AACTTACAAGCGGTTGATGCCCTCCGCGACGTCGGCCACCCCGTCACCGAGTCCCTGCTCGTCCTCAACCTCCTCCGTGG
CGTCAACTCGCGCTTCACCAGCACGGCCGACACCATCGCGAGCGCCCCTGTCTTGTCGTCCTTCACCTCGGTGAGGAACA
CGCTAGTTCTCAAGGAGCTTTGCAACGCCAATTCCGTGCAGGTCCAGTCCGAGAATGCCCTCGTCACAGCCAACACCACC
TACTCCAACTGCGCCAGGGGCACTTGCCACTCCTCTGGCAGCGGTGGGCAGCAGCAGAGCCGCGCCGGCGGCGGCAACGG
CGGCAAGAACAAGGGCAAGAACGGCGGCCGCAACAACCGCAACTCCGGGGGCAACGGCGGCAGTGGATTCGGCGGCCACC
ATGGTGGACAGAACAACGGCGGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27107.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis