Browse Element(s) Details


Os.54849.1.S1_at

Description gb:AK106900.1
DB_XREF= gi:32992109
TID=Os.54849.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54849 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-118-H07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-118-H07, full insert sequence.
FL= gb:AK106900.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3160011/11retrotransposon protein, putative, Ty1-copia subclass, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g31570Os.50205.2.S1_at10/115+18295956..18301673NB-ARC domain containing protein, expressed
LOC_Os05g31570Os.50205.1.S1_x_at5/115+18295956..18301673NB-ARC domain containing protein, expressed
LOC_Os05g31580OsAffx.14902.1.S1_at11/115+18304654..18305241hypothetical protein
LOC_Os05g31590OsAffx.27107.1.S1_at10/115+18309141..18310349hypothetical protein
LOC_Os05g31600Os.54849.1.S1_at11/115+18310739..18314902retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os05g31610OsAffx.14903.1.S1_at11/115+18315706..18320034Leucine Rich Repeat family protein, expressed
LOC_Os05g31620Os.10058.1.S1_at10/115+18325341..18326315EF hand family protein, expressed
LOC_Os05g31630OsAffx.26950.1.S1_at6/115+18336756..18342100transposon protein, putative, Mutator sub-class
LOC_Os05g31630OsAffx.24493.1.S1_at1/115+18336756..18342100transposon protein, putative, Mutator sub-class
LOC_Os05g31630OsAffx.16522.1.S1_at1/115+18336756..18342100transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54849.1.S1_at--544--2911Chr05:18314358..18314382 (25 bp)
AATGGAATAGTACCGTGCCTTCCTG
LOC_Os05g31600
Os.54849.1.S1_at--308--10651Chr05:18314377..18314401 (25 bp)
TTCCTGGTTGCCTAGGCTGGGACAA
LOC_Os05g31600
Os.54849.1.S1_at--916--4811Chr05:18314414..18314438 (25 bp)
GCTCAACTCGGTCCAGCTAGTTTAG
LOC_Os05g31600
Os.54849.1.S1_at--93--6471Chr05:18314438..18314462 (25 bp)
GATAATGAGCTGTCTCGGCTTCTAA
LOC_Os05g31600
Os.54849.1.S1_at--1002--7151Chr05:18314449..18314473 (25 bp)
GTCTCGGCTTCTAAATGATCTCTCA
LOC_Os05g31600
Os.54849.1.S1_at--64--10091Chr05:18314496..18314520 (25 bp)
TAGGAAGTCCCCATCTTTATTTTGC
LOC_Os05g31600
Os.54849.1.S1_at--62--3211Chr05:18314587..18314611 (25 bp)
CAATGTTCCTTTCCTGTGTGCAGGT
LOC_Os05g31600
Os.54849.1.S1_at--457--3472Chr05:18314607..18314630 (24 bp)
CAGGTTTCTTCCACATGTACATCAT
LOC_Os05g31600
Os.54849.1.S1_at--876--8871Chr05:18314697..18314721 (25 bp)
TGAGGACCCGGCTTGTTTAATGGAT
LOC_Os05g31600
Os.54849.1.S1_at--1012--5251Chr05:18314812..18314836 (25 bp)
GAATCCATTTCCCATCTTCATAATA
LOC_Os05g31600
Os.54849.1.S1_at--511--6791Chr05:18314837..18314861 (25 bp)
GTTATCTAATTCCTTTGTACCCTTG
LOC_Os05g31600
Target Sequence 
AATGGAATAGTACCGTGCCTTCCTGGTTGCCTAGGCTGGGACAACAAGCCAGCACGGCTCAACTCGGTCCAGCTAGTTTA
GATAATGAGCTGTCTCGGCTTCTAAATGATCTCTCATTTATGCGAAAAAATAGGAATATAGGAAGTCCCCATCTTTATTT
TGCCTCACCTTCTGCAGGATGTGTTGGTGTTGGATATCACTTTTTTTAAAAAAAAATTTTGCAATGATGCAATGTTCCTT
TCCTGTGTGCAGGTTTCTTCCACATGTACATCATGGCAGATGTAGGTATTCCATTTGGTGTTGTCACAACAAATTAAAGT
TGGGAGAGCACCACCAATGTGAGGACCCGGCTTGTTTAATGGATGAATGAATTAACATGCACGTTTCTCAAACTTCTAAA
CAGTGAGATTGTTGCAAAAATATTCTATATATGAATTTCTTATGATATTGTTTTGAATCCATTTCCCATCTTCATAATAG
TTATCTAATTCCTTTGTACCCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54849.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis