Browse Element(s) Details


Os.10058.1.S1_at

Description gb:AK067214.1
DB_XREF= gi:32977232
TID=Os.10058.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10058 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013126K19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013097O18, full insert sequence.
FL= gb:AK099962.1 gb:AK067214.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3162010/11EF hand family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g31570Os.50205.2.S1_at10/115+18295956..18301673NB-ARC domain containing protein, expressed
LOC_Os05g31570Os.50205.1.S1_x_at5/115+18295956..18301673NB-ARC domain containing protein, expressed
LOC_Os05g31580OsAffx.14902.1.S1_at11/115+18304654..18305241hypothetical protein
LOC_Os05g31590OsAffx.27107.1.S1_at10/115+18309141..18310349hypothetical protein
LOC_Os05g31600Os.54849.1.S1_at11/115+18310739..18314902retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os05g31610OsAffx.14903.1.S1_at11/115+18315706..18320034Leucine Rich Repeat family protein, expressed
LOC_Os05g31620Os.10058.1.S1_at10/115+18325341..18326315EF hand family protein, expressed
LOC_Os05g31630OsAffx.26950.1.S1_at6/115+18336756..18342100transposon protein, putative, Mutator sub-class
LOC_Os05g31630OsAffx.24493.1.S1_at1/115+18336756..18342100transposon protein, putative, Mutator sub-class
LOC_Os05g31630OsAffx.16522.1.S1_at1/115+18336756..18342100transposon protein, putative, Mutator sub-class
LOC_Os05g31640OsAffx.27108.2.S1_s_at11/115+18342383..18343544hypothetical protein
LOC_Os05g31640OsAffx.27108.2.S1_at11/115+18342383..18343544hypothetical protein
LOC_Os05g31650OsAffx.14904.1.S1_at11/115+18344865..18345278hypothetical protein
LOC_Os05g31660OsAffx.27109.1.S1_at10/115+18346870..18347692expressed protein
LOC_Os05g31670Os.11260.1.S1_at11/115+18348218..18349149plasma membrane associated protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10058.1.S1_at--789--8031Chr05:18325641..18325665 (25 bp)
GGAGTTCAAGCTCATGATGGCCGCC
LOC_Os05g31620
Os.10058.1.S1_at--717--8271Chr05:18325604..18325628 (25 bp)
GGCAGGATCGCTTCTTGATTCCAAA
LOC_Os05g31620
Os.10058.1.S1_at--806--10431Chr05:18325590..18325614 (25 bp)
TTGATTCCAAATTCAATCCCTCCTC
LOC_Os05g31620
Os.10058.1.S1_at--76--3511Chr05:18325562..18325586 (25 bp)
CATGGATGATGGACACCTCACCGCT
LOC_Os05g31620
Os.10058.1.S1_at--952--4211Chr05:18325542..18325566 (25 bp)
CCGCTCATGTTCTTTCATTCTTTAA
LOC_Os05g31620
Os.10058.1.S1_at--629--9731Chr05:18325452..18325476 (25 bp)
TAATTAGTTGCAGATACCACACGAA
LOC_Os05g31620
Os.10058.1.S1_at--297--6491Chr05:18325440..18325464 (25 bp)
GATACCACACGAACATAATCCCGTT
LOC_Os05g31620
Os.10058.1.S1_at--261--9751Chr05:18325425..18325449 (25 bp)
TAATCCCGTTTGGTTTTGTACAGAG
LOC_Os05g31620
Os.10058.1.S1_at--855--6051Chr05:18325403..18325427 (25 bp)
GAGTGTACACACTGGAATCGTAATA
LOC_Os05g31620
Os.10058.1.S1_at--255--3131Chr05:18325351..18325375 (25 bp)
AATTTCAGTCTTATTATGGCATCGA
LOC_Os05g31620
Os.10058.1.S1_at--323--151Chr05:18325339..18325363 (25 bp)
ATTATGGCATCGAATTCGACTCCAA
NONE
Target Sequence 
GGAGTTCAAGCTCATGATGGCCGCCGGCGCCGGCTTCGGCAGGATCGCTTCTTGATTCCAAATTCAATCCCTCCTCCGCC
ATGGATGATGGACACCTCACCGCTCATGTTCTTTCATTCTTTAATTATTATTAATTGTAAATATAGATAAATCACGCGGA
ATGATTAATTACCGCGTAGTAATTTCTACTAATTAGTTGCAGATACCACACGAACATAATCCCGTTTGGTTTTGTACAGA
GTGTACACACTGGAATCGTAATAACGATCCCCCAAAAAAAATATATATCAAATTTCAGTCTTATTATGGCATCGAATTCG
ACTCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10058.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis