Browse Element(s) Details


Os.49265.1.S2_a_at

Description gb:AK064956.1
DB_XREF= gi:32974974
TID=Os.49265.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.49265 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-305-G05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013001A06, full insert sequence.
FL= gb:AK064956.1 gb:AK062843.1 gb:AK120398.1 gb:AK067486.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6172011/11Acyltransferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g61690OsAffx.13573.1.S1_at11/113+34899901..34903056protein phosphatase 2C family protein, putative, expressed
LOC_Os03g61690Os.25223.1.A1_at10/113+34899901..34903056protein phosphatase 2C family protein, putative, expressed
LOC_Os03g61700Os.6881.1.S1_at11/113+34904449..34911678expressed protein
LOC_Os03g61700Os.20337.1.S1_x_at1/113+34904449..34911678expressed protein
LOC_Os03g61710Os.6667.1.S1_at11/113+34913653..34919176Galactokinase, putative, expressed
LOC_Os03g61720Os.49265.1.S2_a_at11/113+34924132..34929693Acyltransferase family protein, expressed
LOC_Os03g61720Os.49265.1.S1_at11/113+34924132..34929693Acyltransferase family protein, expressed
LOC_Os03g61730Os.23659.1.S1_at11/113+34930793..34936664DnaJ domain containing protein, expressed
LOC_Os03g61740Os.27231.1.S1_at10/113+34941549..34943118Sex determination protein tasselseed 2, putative, expressed
LOC_Os03g61750Os.5885.1.S1_at11/113+34943482..34946653expressed protein
LOC_Os03g61750OsAffx.23536.1.S1_s_at1/113+34943482..34946653expressed protein
LOC_Os03g61760Os.8121.1.S1_at11/113+34946980..34954660SBP domain containing protein, expressed
LOC_Os03g61760Os.8121.1.S2_at11/113+34946980..34954660SBP domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0048234biological_processmale gamete generation (sensu Magnoliophyta)
GO:0005739cellular_componentmitochondrion
GO:0016020cellular_componentmembrane
GO:0003841molecular_function1-acylglycerol-3-phosphate O-acyltransferase activity
GO:0008415molecular_functionacyltransferase activity
GO:0008514molecular_functionorganic anion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49265.1.S2_a_at--463--7691Chr03:34929242..34929266 (25 bp)
GGGTGGAAGATGCTCGACCCCTTCT
LOC_Os03g61720
Os.49265.1.S2_a_at--308--3071Chr03:34929482..34929506 (25 bp)
AATCAACTACTCTACTGTCTACTAC
LOC_Os03g61720
Os.49265.1.S2_a_at--40--9911Chr03:34929489..34929513 (25 bp)
TACTCTACTGTCTACTACTGTTGTG
LOC_Os03g61720
Os.49265.1.S2_a_at--965--7151Chr03:34929498..34929522 (25 bp)
GTCTACTACTGTTGTGTACTCCACT
LOC_Os03g61720
Os.49265.1.S2_a_at--855--7431Chr03:34929511..34929535 (25 bp)
GTGTACTCCACTACGTGGCTTGTAA
LOC_Os03g61720
Os.49265.1.S2_a_at--783--3711Chr03:34929521..34929545 (25 bp)
CTACGTGGCTTGTAATTAGCATCCT
LOC_Os03g61720
Os.49265.1.S2_a_at--600--7071Chr03:34929532..34929556 (25 bp)
GTAATTAGCATCCTTAATCCCGCAG
LOC_Os03g61720
Os.49265.1.S2_a_at--1012--1531Chr03:34929538..34929562 (25 bp)
AGCATCCTTAATCCCGCAGTTAATT
LOC_Os03g61720
Os.49265.1.S2_a_at--913--7051Chr03:34929573..34929597 (25 bp)
GTAAGACACACTGGTTGTACTCATC
LOC_Os03g61720
Os.49265.1.S2_a_at--851--7911Chr03:34929585..34929609 (25 bp)
GGTTGTACTCATCCAAATGCTCATA
LOC_Os03g61720
Os.49265.1.S2_a_at--465--5471Chr03:34929622..34929646 (25 bp)
GAACTGCGAAATTCGATTGCTGCTT
LOC_Os03g61720
Target Sequence 
GGGTGGAAGATGCTCGACCCCTTCTTCCTCCTCATGAACCCCTCGCCGGCCTACGTCGTGCACTTCCTCGACCCCGTCGC
CGGCGGCGGCGGCGGCCCGGAGGTGGCCAACGAGGTGCAGCGCCGGATCGCGGAGACGCTGGGGTACACCTGCACGGCGC
TCACGCGGAGGGACAAGTACCTCGTGCTCGCCGGCAACGATGGCGTCGTCGCCAACAACAACAAGAGCAATTAATTTACT
AATCAACTACTCTACTGTCTACTACTGTTGTGTACTCCACTACGTGGCTTGTAATTAGCATCCTTAATCCCGCAGTTAAT
TAAGGGGAAGTGTAAGACACACTGGTTGTACTCATCCAAATGCTCATATCAAGTTATAATGAACTGCGAAATTCGATTGC
TGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49265.1.S2_a_at     

Putative homologies in rice

Putative homologies in arabidopsis