Browse Element(s) Details


Os.8121.1.S2_at

Description gb:AK069847.1
DB_XREF= gi:32979871
TID=Os.8121.1
CNT=23
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.8121 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013130O11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023034C10, full insert sequence.
FL= gb:AK065741.1 gb:AK121030.1 gb:AK069847.1 gb:AK072164.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6176011/11SBP domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g61720Os.49265.1.S2_a_at11/113+34924132..34929693Acyltransferase family protein, expressed
LOC_Os03g61720Os.49265.1.S1_at11/113+34924132..34929693Acyltransferase family protein, expressed
LOC_Os03g61730Os.23659.1.S1_at11/113+34930793..34936664DnaJ domain containing protein, expressed
LOC_Os03g61740Os.27231.1.S1_at10/113+34941549..34943118Sex determination protein tasselseed 2, putative, expressed
LOC_Os03g61750Os.5885.1.S1_at11/113+34943482..34946653expressed protein
LOC_Os03g61750OsAffx.23536.1.S1_s_at1/113+34943482..34946653expressed protein
LOC_Os03g61760Os.8121.1.S1_at11/113+34946980..34954660SBP domain containing protein, expressed
LOC_Os03g61760Os.8121.1.S2_at11/113+34946980..34954660SBP domain containing protein, expressed
LOC_Os03g61770OsAffx.13574.1.S1_at10/113+34957123..34959488hypothetical protein
LOC_Os03g61780Os.49920.2.S1_at10/113+34964871..34967693expressed protein
LOC_Os03g61780Os.53362.2.S1_at1/113+34964871..34967693expressed protein
LOC_Os03g61790Os.17255.1.S1_at11/113+34967935..34970720RNA 3'-terminal phosphate cyclase family protein, expressed
LOC_Os03g61800Os.48315.1.S1_at11/113+34976288..34980561glycoside hydrolase family 28 protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8121.1.S2_at--11--8391Chr03:34947552..34947576 (25 bp)
GGCGAGGACCTTCCTGTACAGGCCA
LOC_Os03g61760
Os.8121.1.S2_at--878--9871Chr03:34947536..34947560 (25 bp)
TACAGGCCAGCGATGCTGACCGTGA
LOC_Os03g61760
Os.8121.1.S2_at--784--1971Chr03:34947474..34947498 (25 bp)
ACTCCACACCTGTCCAAAGGTTTAT
LOC_Os03g61760
Os.8121.1.S2_at--500--10131Chr03:34947452..34947476 (25 bp)
TATGCAGCTCCTACATTCAGATGGG
LOC_Os03g61760
Os.8121.1.S2_at--748--7631Chr03:34947430..34947454 (25 bp)
GGGAGCTGTTAGAACGTGGACCAAT
LOC_Os03g61760
Os.8121.1.S2_at--943--7211Chr03:34947358..34947382 (25 bp)
GTCGAGAGCTTAGTGTGCTGGCTAA
LOC_Os03g61760
Os.8121.1.S2_at--707--4331Chr03:34947133..34947157 (25 bp)
CCAGAGCTTCTTGTTGGAGCCATGC
LOC_Os03g61760
Os.8121.1.S2_at--1064--631Chr03:34947112..34947136 (25 bp)
ATGCTTCTGGCTGCTTTCGGTTCAT
LOC_Os03g61760
Os.8121.1.S2_at--963--4871Chr03:34947100..34947124 (25 bp)
GCTTTCGGTTCATTCTAGACTTCTA
LOC_Os03g61760
Os.8121.1.S2_at--87--10031Chr03:34947085..34947109 (25 bp)
TAGACTTCTAGTTTTGTGGCTACAA
LOC_Os03g61760
Os.8121.1.S2_at--452--10391Chr03:34947013..34947037 (25 bp)
TTTTCGTCAGCGTTGTATTGTTGTA
LOC_Os03g61760
Target Sequence 
GGCGAGGACCTTCCTGTACAGGCCAGCGATGCTGACCGTGATGGGCATCGCCGTCATCTGCGTCTGCGTCGGCCTGCTAC
TCCACACCTGTCCAAAGGTTTATGCAGCTCCTACATTCAGATGGGAGCTGTTAGAACGTGGACCAATGTGAGGAGGAGCT
TAGAATGGAATAAGTGTAGTTGTGTTTTACGTAAGTCGAGAGCTTAGTGTGCTGGCTAAGATCAAAATAACAGTACTATG
TGAGGAGGATGATCCTTTGTATTTAAAGCNAGGATCGTTTCGTTTATATAAAAGCTTACATACCGTCATTATTAATTATT
ATTGATTAGTTATTATTATTTATATTATATTTACCGCCTAACATGTAAACAGAACATATGTTCCATAAAATTCATGGTGT
GGTTGTAGAATTCATTCTTTCCAGAGCTTCTTGTTGGAGCCATGCTTCTGGCTGCTTTCGGTTCATTCTAGACTTCTAGT
TTTGTGGCTACAAGATTTTGTCGGTGTTGTATTGTTGTAAACTCGGAATAAAACTTTTTTTTTTCGTCAGCGTTGTATTG
TTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8121.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis