Browse Element(s) Details


OsAffx.13574.1.S1_at

Description tigr:9631.m06097
TID=OsAffx.13574.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6177010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g61730Os.23659.1.S1_at11/113+34930793..34936664DnaJ domain containing protein, expressed
LOC_Os03g61740Os.27231.1.S1_at10/113+34941549..34943118Sex determination protein tasselseed 2, putative, expressed
LOC_Os03g61750Os.5885.1.S1_at11/113+34943482..34946653expressed protein
LOC_Os03g61750OsAffx.23536.1.S1_s_at1/113+34943482..34946653expressed protein
LOC_Os03g61760Os.8121.1.S1_at11/113+34946980..34954660SBP domain containing protein, expressed
LOC_Os03g61760Os.8121.1.S2_at11/113+34946980..34954660SBP domain containing protein, expressed
LOC_Os03g61770OsAffx.13574.1.S1_at10/113+34957123..34959488hypothetical protein
LOC_Os03g61780Os.49920.2.S1_at10/113+34964871..34967693expressed protein
LOC_Os03g61780Os.53362.2.S1_at1/113+34964871..34967693expressed protein
LOC_Os03g61790Os.17255.1.S1_at11/113+34967935..34970720RNA 3'-terminal phosphate cyclase family protein, expressed
LOC_Os03g61800Os.48315.1.S1_at11/113+34976288..34980561glycoside hydrolase family 28 protein, putative, expressed
LOC_Os03g61810Os.53628.2.S1_at11/113+34980933..34983588Guanine deaminase, putative, expressed
LOC_Os03g61810Os.53628.1.S1_x_at11/113+34980933..34983588Guanine deaminase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13574.1.S1_at--808--4731Chr03:34957649..34957673 (25 bp)
GCTGACGCTTCCAGTTTTCAAGCAA
LOC_Os03g61770
OsAffx.13574.1.S1_at--698--211NONE
ATTTGAGTCTCCAGCGTACGTGCAC
NONE
OsAffx.13574.1.S1_at--455--2311Chr03:34959114..34959138 (25 bp)
AAAGGATGCCGGGTTGCCGACCGAT
LOC_Os03g61770
OsAffx.13574.1.S1_at--329--531Chr03:34959137..34959161 (25 bp)
ATCGCTCGGCTTTTCTTATGGGAGA
LOC_Os03g61770
OsAffx.13574.1.S1_at--278--9071Chr03:34959178..34959202 (25 bp)
TGCATATGCACGGTTGGTCTGGATC
LOC_Os03g61770
OsAffx.13574.1.S1_at--533--8091Chr03:34959203..34959227 (25 bp)
GGACCACACGTCACACATATGCATG
LOC_Os03g61770
OsAffx.13574.1.S1_at--149--8871Chr03:34959231..34959255 (25 bp)
TGAGGTCCAGGAACGCCCAAGGTGA
LOC_Os03g61770
OsAffx.13574.1.S1_at--20--7411Chr03:34959252..34959276 (25 bp)
GTGATCGTTCCATCGAGTTGGCATC
LOC_Os03g61770
OsAffx.13574.1.S1_at--407--1751Chr03:34959280..34959368 (25 bp)
ACCTACGCATTACACGCATGATCTT
LOC_Os03g61770
OsAffx.13574.1.S1_at--841--5091Chr03:34959395..34959419 (25 bp)
GCACGATGTTTTTGTCAGGGTCCAC
LOC_Os03g61770
OsAffx.13574.1.S1_at--64--2851Chr03:34959432..34959456 (25 bp)
AAGTCACGTGTCTTTGACCGCAAGC
LOC_Os03g61770
Target Sequence 
GCTGACGCTTCCAGTTTTCAAGCAAAACCATTTGAATTAGCTTCAGAATTTGAGTCTCCAGCGTACGTGCACGACTGCAC
GGTGTATGTCCACCTAGGGAAAAGGATGCCGGGTTGCCGACCGATCGCTCGGCTTTTCTTATGGGAGAAGCTAGCAGTAG
CATATGCATATGCACGGTTGGTCTGGATCGGACCACACGTCACACATATGCATGATTTGAGGTCCAGGAACGCCCAAGGT
GATCGTTCCATCGAGTTGGCATCTGCACCTACGCATTACACGCATGATCTTAAAATTGAGATCCTCTGCAGTAAAATGCA
CGATGTTTTTGTCAGGGTCCACATGTCAGTGACAAAGTCACGTGTCTTTGACCGCAAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13574.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis