Browse Element(s) Details


Os.53362.2.S1_at

Description gb:AK109855.1
DB_XREF= gi:32995064
TID=Os.53362.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53362 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-148-G01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-148-G01, full insert sequence.
FL= gb:AK109855.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g396006/11Sodium/hydrogen exchanger family protein, expressed
LOC_Os03g617801/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g39570Os.47463.1.S1_x_at6/115+23141988..23145685transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g39570Os.14491.2.S1_x_at4/115+23141988..23145685transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g39580NANA5+23156756..23157406Streptomyces cyclase/dehydrase family protein
LOC_Os05g39590Os.54212.1.S1_at11/115+23164500..23166848AP2 domain containing protein, expressed
LOC_Os05g39600Os.53362.1.S1_at11/115+23167929..23171197Sodium/hydrogen exchanger family protein, expressed
LOC_Os05g39600Os.53362.2.S1_at6/115+23167929..23171197Sodium/hydrogen exchanger family protein, expressed
LOC_Os05g39610Os.10500.1.S1_at11/115+23171743..23174288Exo70 exocyst complex subunit family protein, expressed
LOC_Os05g39620OsAffx.21171.3.S1_x_at4/115+23179346..23185029retrotransposon protein, putative, unclassified
LOC_Os05g39620OsAffx.21171.5.S1_at3/115+23179346..23185029retrotransposon protein, putative, unclassified
LOC_Os05g39620OsAffx.21171.5.S1_x_at3/115+23179346..23185029retrotransposon protein, putative, unclassified
LOC_Os05g39620OsAffx.21171.4.S1_x_at2/115+23179346..23185029retrotransposon protein, putative, unclassified
LOC_Os05g39620OsAffx.22711.4.S1_at1/115+23179346..23185029retrotransposon protein, putative, unclassified
LOC_Os05g39630OsAffx.29284.1.S1_x_at1/115+23187528..23188130hypothetical protein
LOC_Os05g39640OsAffx.15029.1.S1_at11/115+23189008..23189486hypothetical protein
LOC_Os05g39650Os.27499.2.S1_a_at11/115+23190400..23193314phytanoyl-CoA dioxygenase, putative, expressed
LOC_Os05g39650Os.23310.1.A1_s_at4/115+23190400..23193314phytanoyl-CoA dioxygenase, putative, expressed
LOC_Os05g39650Os.23310.1.A1_x_at1/115+23190400..23193314phytanoyl-CoA dioxygenase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006812biological_processcation transport
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0005451molecular_functionmonovalent cation:proton antiporter activity
GO:0015385molecular_functionsodium:hydrogen antiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53362.2.S1_at--1107--211Chr05:23167866..23167890 (25 bp)
ATATTCTCGAGGATACCAAGTTCTG
NONE
Os.53362.2.S1_at--861--9371Chr05:23167872..23167896 (25 bp)
TCGAGGATACCAAGTTCTGAACCTT
NONE
Os.53362.2.S1_at--623--6711Chr05:23167885..23167909 (25 bp)
GTTCTGAACCTTTTTGACATGTCAT
NONE
Os.53362.2.S1_at--241--5671Chr05:23167900..23167924 (25 bp)
GACATGTCATTGATTTCTCCTCTCT
NONE
Os.53362.2.S1_at--148--771Chr05:23167903..23167927 (25 bp)
ATGTCATTGATTTCTCCTCTCTTCT
NONE
Os.53362.2.S1_at--951--3751Chr05:23168317..23168341 (25 bp)
CTCATCTTTCTTCTTATGCTTACGT
LOC_Os05g39600
Os.53362.2.S1_at--1149--10551Chr05:23168324..23168348 (25 bp)
TTCTTCTTATGCTTACGTTTACCAG
LOC_Os05g39600
Os.53362.2.S1_at--512--10131Chr05:23168331..23168355 (25 bp)
TATGCTTACGTTTACCAGCCAAATT
LOC_Os05g39600
Os.53362.2.S1_at--686--1711Chr05:23168344..23168368 (25 bp)
ACCAGCCAAATTTTATACTTCCAAT
LOC_Os05g39600
Os.53362.2.S1_at--704--10411Chr05:23168356..23168380 (25 bp)
TTATACTTCCAATATTTTGAGGTTT
LOC_Os05g39600
Os.53362.2.S1_at--382--10217Chr10:2536403..2536422 (20 bp)
TATTCTTTGTTTTTATATCGCTAAG
NONE
Target Sequence 
ATATTCTCGAGGATACCAAGTTCTGAACCTTTTTGACATGTCATTGATTTCTCCTCTCTTCTCGCCCTCCGACCACTCAT
CCCCTCCACGTTGCAGCAAACCGCCATGGCCAAAGCAGCCTGACGAGGCGGGCGGGCCGCGGGGGGCAAGAAGAGCCAGC
GGCGCGGCGACCGCGCCATTGCCGGCGCGCGCAGTGGGGCGCGGATGCAGAGGAGGCAGACGCCGAGGAATCGTTGGGAA
TGGATAAGATCGACTGCTACGTCGTGCCGCAGACCACGGGCACCGGCCGGAACATCTTCCAGGGCGGCAGCCCGCTCTCG
GCGTCGCTGCCGCTGCTCGGCGTGCAGCTCGTCCTCATCGTCGCCGTCACCCGCGTCCTCTACTTCCTCCTCAAGCCGCT
GAAGCAGCCCCGCGTCGTGTCCGAGATCATGGCACGTCCACCCCCTCGAGCCTCATCTTTCTTCTTATGCTTACGTTTAC
CAGCCAAATTTTATACTTCCAATATTTTGAGGTTTTTTATCAAAGTTTTTTATTCTTTGTTTTTATATCGCTAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53362.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis