Browse Element(s) Details


Os.23310.1.A1_x_at

Description gb:CA759213
DB_XREF= gi:25803252
DB_XREF=BR060013A10E08.ab1
CLONE=BR060013A10E08.ab1
TID=Os.23310.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.23310 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g500402/11phytanoyl-CoA dioxygenase, putative, expressed
LOC_Os05g396501/11phytanoyl-CoA dioxygenase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g50010Os.20280.1.S1_at11/113+28482271..28490414chloroplast outer membrane translocon subunit, putative, expressed
LOC_Os03g50020Os.54774.1.S1_x_at1/113+28494424..28495071retrotransposon, putative, centromere-specific
LOC_Os03g50030Os.3160.1.S1_at11/113+28497524..28499113Phospholipase A2, putative, expressed
LOC_Os03g50040Os.27499.2.S1_a_at11/113+28501125..28504572phytanoyl-CoA dioxygenase, putative, expressed
LOC_Os03g50040Os.23310.1.A1_s_at11/113+28501125..28504572phytanoyl-CoA dioxygenase, putative, expressed
LOC_Os03g50040Os.23310.1.A1_x_at2/113+28501125..28504572phytanoyl-CoA dioxygenase, putative, expressed
LOC_Os03g50050OsAffx.13431.1.S1_at11/113+28506013..28507518F-box domain containing protein, expressed
LOC_Os03g50050OsAffx.28800.1.S1_x_at4/113+28506013..28507518F-box domain containing protein, expressed
LOC_Os03g50070Os.3167.1.S1_at11/113+28510130..28514165expressed protein
LOC_Os03g50080OsAffx.3560.1.S1_at11/113+28514772..28516004immunophilin, putative, expressed
LOC_Os03g50090Os.3228.1.S1_a_at11/113+28516384..28520481transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os03g50100OsAffx.13432.1.S1_at11/113+28522812..28526290expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0048244molecular_functionphytanoyl-CoA dioxygenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23310.1.A1_x_at--416--1971NONE
ACTGAGGTTACATGTATTGATACGA
NONE
Os.23310.1.A1_x_at--604--2111NONE
ACATGTATTGATACGAAAGGATGTG
NONE
Os.23310.1.A1_x_at--529--8591NONE
TGGTCCAAACAAACTGGGTACAAAG
NONE
Os.23310.1.A1_x_at--1150--7831NONE
GGTACAAAGGAAAATCCCACCTCAG
NONE
Os.23310.1.A1_x_at--672--4172Chr05:23190403..23190427 (25 bp)
CCCACCTCAGCCACTTTATGAAAAT
LOC_Os05g39650
Os.23310.1.A1_x_at--603--1211NONE
AGTTCAAGCAGTTACCTATGTGTCA
NONE
Os.23310.1.A1_x_at--890--9971NONE
TACCTATGTGTCAAATAGACGAGTT
NONE
Os.23310.1.A1_x_at--810--3091NONE
AATAGACGAGTTATGACCTAGAAGC
NONE
Os.23310.1.A1_x_at--612--411NONE
ATCATGTAGCAATGTAAATACCTTG
NONE
Os.23310.1.A1_x_at--580--3491NONE
CATGTAGCAATGTAAATACCTTGCT
NONE
Os.23310.1.A1_x_at--643--3632Chr05:23190305..23190329 (25 bp)
CTTGCTACTCTGTTTTCATGGATGT
NONE
Target Sequence 
ACTGAGGTTACATGTATTGATACGAAAGGATGTGNTGGTCCAAACAAACTGGGTACAAAGGAAAATCCCACCTCAGCCAC
TTTATGAAAATTAGTTCAAGCAGTTACCTATGTGTCAAATAGACGAGTTATGACCTAGAAGCNATCATGTAGCAATGTAA
ATACCTTGCTACTCTGTTTTCATGGATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23310.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis