Browse Element(s) Details


OsAffx.13431.1.S1_at

Description tigr:9631.m04885
TID=OsAffx.13431.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5005011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g50010Os.20280.1.S1_at11/113+28482271..28490414chloroplast outer membrane translocon subunit, putative, expressed
LOC_Os03g50020Os.54774.1.S1_x_at1/113+28494424..28495071retrotransposon, putative, centromere-specific
LOC_Os03g50030Os.3160.1.S1_at11/113+28497524..28499113Phospholipase A2, putative, expressed
LOC_Os03g50040Os.27499.2.S1_a_at11/113+28501125..28504572phytanoyl-CoA dioxygenase, putative, expressed
LOC_Os03g50040Os.23310.1.A1_s_at11/113+28501125..28504572phytanoyl-CoA dioxygenase, putative, expressed
LOC_Os03g50040Os.23310.1.A1_x_at2/113+28501125..28504572phytanoyl-CoA dioxygenase, putative, expressed
LOC_Os03g50050OsAffx.13431.1.S1_at11/113+28506013..28507518F-box domain containing protein, expressed
LOC_Os03g50050OsAffx.28800.1.S1_x_at4/113+28506013..28507518F-box domain containing protein, expressed
LOC_Os03g50070Os.3167.1.S1_at11/113+28510130..28514165expressed protein
LOC_Os03g50080OsAffx.3560.1.S1_at11/113+28514772..28516004immunophilin, putative, expressed
LOC_Os03g50090Os.3228.1.S1_a_at11/113+28516384..28520481transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os03g50100OsAffx.13432.1.S1_at11/113+28522812..28526290expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13431.1.S1_at--391--6151Chr03:28507132..28507156 (25 bp)
GAGGTCATCGAGTCGATCCCCATGG
LOC_Os03g50050
OsAffx.13431.1.S1_at--834--4691Chr03:28507223..28507247 (25 bp)
GCGGCTCGAGTTTGATGGTGACCAT
LOC_Os03g50050
OsAffx.13431.1.S1_at--763--5831Chr03:28507242..28507266 (25 bp)
GACCATTGCCTTTGGATGGACGTAT
LOC_Os03g50050
OsAffx.13431.1.S1_at--536--8531Chr03:28507258..28507282 (25 bp)
TGGACGTATTGCGAGTTGGATCTAA
LOC_Os03g50050
OsAffx.13431.1.S1_at--816--1431Chr03:28507289..28507313 (25 bp)
AGAACTCAGAGAATTGTCCGTCTTC
LOC_Os03g50050
OsAffx.13431.1.S1_at--1154--31Chr03:28507301..28507325 (25 bp)
ATTGTCCGTCTTCTTCACAGTGGAA
LOC_Os03g50050
OsAffx.13431.1.S1_at--689--3311Chr03:28507316..28507340 (25 bp)
CACAGTGGAATTCTTGCATGGTTGC
LOC_Os03g50050
OsAffx.13431.1.S1_at--910--4951Chr03:28507339..28507363 (25 bp)
GCATATGTCTTTGCATGTCTAGTGT
LOC_Os03g50050
OsAffx.13431.1.S1_at--479--3711Chr03:28507357..28507381 (25 bp)
CTAGTGTTCATCAACCTTGAGTATT
LOC_Os03g50050
OsAffx.13431.1.S1_at--780--1191Chr03:28507376..28507400 (25 bp)
AGTATTTTTATCTCTTGTGGATCAT
LOC_Os03g50050
OsAffx.13431.1.S1_at--1053--5251Chr03:28507422..28507446 (25 bp)
GAATCCAGGATGTTCTCTGCTTTGT
LOC_Os03g50050
Target Sequence 
GAGGTCATCGAGTCGATCCCCATGGCGGAGGGGTACAAGCCGCCCTGCTTCTGGTTCGCGCCGGTCTACACGCCGTGACC
GTGCCACCGCGGCGGCTCGAGTTTGATGGTGACCATTGCCTTTGGATGGACGTATTGCGAGTTGGATCTAAGCCAGAAGA
ACTCAGAGAATTGTCCGTCTTCTTCACAGTGGAATTCTTGCATGGTTGCATATGTCTTTGCATGTCTAGTGTTCATCAAC
CTTGAGTATTTTTATCTCTTGTGGATCATAATGGAGTGGTAGATTATCAGGAATCCAGGATGTTCTCTGCTTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13431.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis