Browse Element(s) Details


Os.3160.1.S1_at

Description gb:AK105828.1
DB_XREF= gi:32991037
TID=Os.3160.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.3160 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-203-E04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-203-E04, full insert sequence.
FL= gb:AK105828.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5003011/11Phospholipase A2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g50010Os.20280.1.S1_at11/113+28482271..28490414chloroplast outer membrane translocon subunit, putative, expressed
LOC_Os03g50020Os.54774.1.S1_x_at1/113+28494424..28495071retrotransposon, putative, centromere-specific
LOC_Os03g50030Os.3160.1.S1_at11/113+28497524..28499113Phospholipase A2, putative, expressed
LOC_Os03g50040Os.27499.2.S1_a_at11/113+28501125..28504572phytanoyl-CoA dioxygenase, putative, expressed
LOC_Os03g50040Os.23310.1.A1_s_at11/113+28501125..28504572phytanoyl-CoA dioxygenase, putative, expressed
LOC_Os03g50040Os.23310.1.A1_x_at2/113+28501125..28504572phytanoyl-CoA dioxygenase, putative, expressed
LOC_Os03g50050OsAffx.13431.1.S1_at11/113+28506013..28507518F-box domain containing protein, expressed
LOC_Os03g50050OsAffx.28800.1.S1_x_at4/113+28506013..28507518F-box domain containing protein, expressed
LOC_Os03g50070Os.3167.1.S1_at11/113+28510130..28514165expressed protein
LOC_Os03g50080OsAffx.3560.1.S1_at11/113+28514772..28516004immunophilin, putative, expressed
LOC_Os03g50090Os.3228.1.S1_a_at11/113+28516384..28520481transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os03g50100OsAffx.13432.1.S1_at11/113+28522812..28526290expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0004623molecular_functionphospholipase A2 activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3160.1.S1_at--1022--5611Chr03:28498398..28498419 (22 bp)
GACAACTGCGTCCAGGCCAAGAATG
LOC_Os03g50030
Os.3160.1.S1_at--253--5511Chr03:28498619..28498643 (25 bp)
GAACAAGTGCATGATCGACGAGGTC
LOC_Os03g50030
Os.3160.1.S1_at--325--1031Chr03:28498639..28498663 (25 bp)
AGGTCATCGACGTGATCTCGCTCGT
LOC_Os03g50030
Os.3160.1.S1_at--534--2651Chr03:28498701..28498725 (25 bp)
AAGCCTTAGCTTACATAGCCTCAGC
LOC_Os03g50030
Os.3160.1.S1_at--85--5031Chr03:28498798..28498822 (25 bp)
GCAGTATTGTCCTCTAACTTCGAAT
LOC_Os03g50030
Os.3160.1.S1_at--279--10631Chr03:28498816..28498840 (25 bp)
TTCGAATCACTGACGTGTAGGTCCA
LOC_Os03g50030
Os.3160.1.S1_at--971--9831Chr03:28498900..28498924 (25 bp)
TAAAGTGCTTGTGCGTTATTGGGTG
LOC_Os03g50030
Os.3160.1.S1_at--94--7851Chr03:28498928..28498952 (25 bp)
GGTACATGTTTTGCTTGCTTGGTGT
LOC_Os03g50030
Os.3160.1.S1_at--479--7471Chr03:28498969..28498993 (25 bp)
GTGTGTGCAGCTTAGCTAGCACCGG
LOC_Os03g50030
Os.3160.1.S1_at--723--10511Chr03:28499016..28499040 (25 bp)
TTCAACTTCACAGTTCACGTGGGCT
LOC_Os03g50030
Os.3160.1.S1_at--97--5631Chr03:28499048..28499072 (25 bp)
GACAGAGGCCCAGACTTACGACAAA
LOC_Os03g50030
Target Sequence 
GACAACTGCGTCCAGGCCAAGAATGACTACCTGANCACGGCGTGCAACGAGGAGTTGCTGGAGTGCCTGGCGAGGCTGCG
GGAGGGCTCGTCGACGTTCCAGGGGAACAAGTGCATGATCGACGAGGTCATCGACGTGATCTCGCTCGTCATCGAGGCCG
CCGTCGTCGCCGGCAGGCTGCTGCACAAGCCTTAGCTTACATAGCCTCAGCCGTGCTGCAGGCACCACCCCTGCCGGCGG
CGAACGGCGGCCGGATCGACGGCATGGGCGGCGCGAAGGATGAGCAGTATTGTCCTCTAACTTCGAATCACTGACGTGTA
GGTCCAGTAGATGTGGGGCCTACATGTCAGTCAGTCACAGTCAATAATGACCGTACTACAGAGGATAAAGTGCTTGTGCG
TTATTGGGTGGGTGGTACATGTTTTGCTTGCTTGGTGTGTGTCAGTGTGTGTGTGTGTGTGCAGCTTAGCTAGCACCGGG
CTGGCGGCTGCGTGCGTCGCCTTCAACTTCACAGTTCACGTGGGCTCCCCCTTGACAGAGGCCCAGACTTACGACAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3160.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis