Browse Element(s) Details


OsAffx.13432.1.S1_at

Description tigr:9631.m04892
TID=OsAffx.13432.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5010011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g50030Os.3160.1.S1_at11/113+28497524..28499113Phospholipase A2, putative, expressed
LOC_Os03g50040Os.27499.2.S1_a_at11/113+28501125..28504572phytanoyl-CoA dioxygenase, putative, expressed
LOC_Os03g50040Os.23310.1.A1_s_at11/113+28501125..28504572phytanoyl-CoA dioxygenase, putative, expressed
LOC_Os03g50040Os.23310.1.A1_x_at2/113+28501125..28504572phytanoyl-CoA dioxygenase, putative, expressed
LOC_Os03g50050OsAffx.13431.1.S1_at11/113+28506013..28507518F-box domain containing protein, expressed
LOC_Os03g50050OsAffx.28800.1.S1_x_at4/113+28506013..28507518F-box domain containing protein, expressed
LOC_Os03g50070Os.3167.1.S1_at11/113+28510130..28514165expressed protein
LOC_Os03g50080OsAffx.3560.1.S1_at11/113+28514772..28516004immunophilin, putative, expressed
LOC_Os03g50090Os.3228.1.S1_a_at11/113+28516384..28520481transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os03g50100OsAffx.13432.1.S1_at11/113+28522812..28526290expressed protein
LOC_Os03g50110Os.50527.1.S1_a_at11/113+28534436..28535884expressed protein
LOC_Os03g50120Os.27979.1.S1_at11/113+28537788..28542823Zn-finger in Ran binding protein and others containing protein, expressed
LOC_Os03g50130Os.8549.1.S1_at11/113+28543533..28545513MAPEG family protein, expressed
LOC_Os03g50140Os.48351.1.S1_at7/113+28547492..28548294Plastocyanin-like domain containing protein, expressed
LOC_Os03g50150OsAffx.13433.1.S1_s_at11/113+28549742..28552983NB-ARC domain containing protein, expressed
LOC_Os03g50150OsAffx.13433.1.S1_at11/113+28549742..28552983NB-ARC domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13432.1.S1_at--277--10871Chr03:28523368..28523392 (25 bp)
TTGGTTGCTCACTCGCAGATTTTGA
LOC_Os03g50100
OsAffx.13432.1.S1_at--645--5711Chr03:28523335..28523359 (25 bp)
GACTCTCCATACTGGAGCAGCTCAA
LOC_Os03g50100
OsAffx.13432.1.S1_at--61--5531Chr03:28523234..28523258 (25 bp)
GAAAACCATTTGATGGGTGCCTCAA
LOC_Os03g50100
OsAffx.13432.1.S1_at--1115--7271Chr03:28523218..28523242 (25 bp)
GTGCCTCAAATGGTTTCTCTGATGA
LOC_Os03g50100
OsAffx.13432.1.S1_at--80--2431Chr03:28523140..28523164 (25 bp)
AAAAGCTGCTCCCATTATTTGATGA
LOC_Os03g50100
OsAffx.13432.1.S1_at--126--3591Chr03:28523128..28523152 (25 bp)
CATTATTTGATGACACTACCGTGGA
LOC_Os03g50100
OsAffx.13432.1.S1_at--63--8631Chr03:28523100..28523124 (25 bp)
TGGGAACGACCTCCTAACAAGGCAA
LOC_Os03g50100
OsAffx.13432.1.S1_at--162--6371Chr03:28523075..28523099 (25 bp)
GATCCTGAGGCAGACCATTCTACAG
LOC_Os03g50100
OsAffx.13432.1.S1_at--1104--8831Chr03:28522992..28523016 (25 bp)
TGATCAAGTCCATGAGCGGCTGCAT
LOC_Os03g50100
OsAffx.13432.1.S1_at--833--4691Chr03:28522977..28523001 (25 bp)
GCGGCTGCATGCTCTAGAGGCAGAC
LOC_Os03g50100
OsAffx.13432.1.S1_at--99--6431Chr03:28522884..28522908 (25 bp)
GATCTTGCAGCATCTTAGGGACCTG
LOC_Os03g50100
Target Sequence 
TTGGTTGCTCACTCGCAGATTTTGAGGAAGAAAGACTCTCCATACTGGAGCAGCTCAAATTGCTAGAGGAGAGGCTATTT
GACCTCGAAGATGAAGATTCAGATAGTGTTAAGATGGACAAGCGATTATCAGAAGAAAACCATTTGATGGGTGCCTCAAA
TGGTTTCTCTGATGATGATAGCAACTTCAAACTTCATGACAAAAGAAAAGGTGTAAGCTATAGGGGAAAAAAGCTGCTCC
CATTATTTGATGACACTACCGTGGAAGATGGGAACGACCTCCTAACAAGGCAAGATCCTGAGGCAGACCATTCTACAGAA
AATGTTGTGTTGGAACCAGCTAATGAGCAAGATAAACTTGCAATAGCGCATGAAATTGATCAAGTCCATGAGCGGCTGCA
TGCTCTAGAGGCAGACAAGGAATTTATAAAACAGTGTGTGAGGTCTTTGAAGAAAGGAGACAAGGGGTTTGATCTTCTTC
AGGAGATCTTGCAGCATCTTAGGGACCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13432.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis