Browse Element(s) Details


Os.8549.1.S1_at

Description gb:AK062406.1
DB_XREF= gi:32972424
TID=Os.8549.1
CNT=66
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8549 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-102-E08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-102-E08, full insert sequence.
FL= gb:AK062406.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5013011/11MAPEG family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g50090Os.3228.1.S1_a_at11/113+28516384..28520481transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os03g50100OsAffx.13432.1.S1_at11/113+28522812..28526290expressed protein
LOC_Os03g50110Os.50527.1.S1_a_at11/113+28534436..28535884expressed protein
LOC_Os03g50120Os.27979.1.S1_at11/113+28537788..28542823Zn-finger in Ran binding protein and others containing protein, expressed
LOC_Os03g50130Os.8549.1.S1_at11/113+28543533..28545513MAPEG family protein, expressed
LOC_Os03g50140Os.48351.1.S1_at7/113+28547492..28548294Plastocyanin-like domain containing protein, expressed
LOC_Os03g50150OsAffx.13433.1.S1_s_at11/113+28549742..28552983NB-ARC domain containing protein, expressed
LOC_Os03g50150OsAffx.13433.1.S1_at11/113+28549742..28552983NB-ARC domain containing protein, expressed
LOC_Os03g50160Os.4715.1.S1_at11/113+28553612..28555498Chemocyanin precursor, putative, expressed
LOC_Os03g50180Os.49985.1.S1_at1/113+28567045..28573223retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0004364molecular_functionglutathione transferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8549.1.S1_at--174--9331Chr03:28544883..28544907 (25 bp)
TCGCGAGGTTCTTCTACTTCAAGGG
LOC_Os03g50130
Os.8549.1.S1_at--194--451Chr03:28543946..28543970 (25 bp)
ATCTTTGGGTTGATCATCTGCACGG
LOC_Os03g50130
Os.8549.1.S1_at--187--2631Chr03:28543907..28543931 (25 bp)
AACCTGGTCCTGAGGGAATCCATCT
LOC_Os03g50130
Os.8549.1.S1_at--816--3851Chr03:28543884..28543908 (25 bp)
CTGAGCTCTTCAGTTGATCCATGAG
LOC_Os03g50130
Os.8549.1.S1_at--291--8911Chr03:28543863..28543887 (25 bp)
TGAGCTGACCAGCTGAGAGCTTCCG
LOC_Os03g50130
Os.8549.1.S1_at--332--1371Chr03:28543848..28543872 (25 bp)
AGAGCTTCCGTTGCGACTTGTGATG
LOC_Os03g50130
Os.8549.1.S1_at--300--6891Chr03:28543811..28543835 (25 bp)
GTATAGGTCTTGTGACTTCAGTCAG
LOC_Os03g50130
Os.8549.1.S1_at--1046--2931Chr03:28543750..28543774 (25 bp)
AAGGCTGGTTGTAGTTCCATCTTAA
LOC_Os03g50130
Os.8549.1.S1_at--261--6031Chr03:28543710..28543734 (25 bp)
GAGATGGATTTGCAGTCTTCCCTGT
LOC_Os03g50130
Os.8549.1.S1_at--762--2811Chr03:28543644..28543668 (25 bp)
AAGATTTACCTTTCACCACATCATC
LOC_Os03g50130
Os.8549.1.S1_at--488--10171Chr03:28543584..28543608 (25 bp)
TATCATGTCTTGTCCTGCGATGGGA
LOC_Os03g50130
Target Sequence 
TCGCGAGGTTCTTCTACTTCAAGGGCTACGCCACCGGCATCCCGGACAACCGCCTCAAGATTGGGGGGCTGAACTTCTTG
GCGATCTTTGGGTTGATCATCTGCACGGCTTCGTTCGGCATCAACCTGGTCCTGAGGGAATCCATCTGAGCTCTTCAGTT
GATCCATGAGCTGACCAGCTGAGAGCTTCCGTTGCGACTTGTGATGTTGCCTATAGGCGTATAGGTCTTGTGACTTCAGT
CAGCTAGATTTTAGTCTCTGTTTTTCCTTTGGTGTTAATAAGGCTGGTTGTAGTTCCATCTTAAAAATACGACTACATGG
AGATGGATTTGCAGTCTTCCCTGTTCCTTTCTACTCTACTTCCTTTGTAGAGGGGTTGTACTGTTAAGATTTACCTTTCA
CCACATCATCAGTGTTAAGTGCAGTTGTAAATTTCTTTATAAGTTTATCATGTCTTGTCCTGCGATGGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8549.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis