Browse Element(s) Details


Os.27979.1.S1_at

Description gb:AK073541.1
DB_XREF= gi:32983564
TID=Os.27979.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.27979 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033043D13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033043D13, full insert sequence.
FL= gb:AK073541.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5012011/11Zn-finger in Ran binding protein and others containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g50070Os.3167.1.S1_at11/113+28510130..28514165expressed protein
LOC_Os03g50080OsAffx.3560.1.S1_at11/113+28514772..28516004immunophilin, putative, expressed
LOC_Os03g50090Os.3228.1.S1_a_at11/113+28516384..28520481transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os03g50100OsAffx.13432.1.S1_at11/113+28522812..28526290expressed protein
LOC_Os03g50110Os.50527.1.S1_a_at11/113+28534436..28535884expressed protein
LOC_Os03g50120Os.27979.1.S1_at11/113+28537788..28542823Zn-finger in Ran binding protein and others containing protein, expressed
LOC_Os03g50130Os.8549.1.S1_at11/113+28543533..28545513MAPEG family protein, expressed
LOC_Os03g50140Os.48351.1.S1_at7/113+28547492..28548294Plastocyanin-like domain containing protein, expressed
LOC_Os03g50150OsAffx.13433.1.S1_s_at11/113+28549742..28552983NB-ARC domain containing protein, expressed
LOC_Os03g50150OsAffx.13433.1.S1_at11/113+28549742..28552983NB-ARC domain containing protein, expressed
LOC_Os03g50160Os.4715.1.S1_at11/113+28553612..28555498Chemocyanin precursor, putative, expressed
LOC_Os03g50180Os.49985.1.S1_at1/113+28567045..28573223retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0009658biological_processchloroplast organization and biogenesis
GO:0009507cellular_componentchloroplast
GO:0009570cellular_componentchloroplast stroma
GO:0005488molecular_functionbinding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27979.1.S1_at--236--5071Chr03:28542265..28542289 (25 bp)
GCAGCTTTGTGAACTTTCGACGCAA
LOC_Os03g50120
Os.27979.1.S1_at--1119--2851Chr03:28542303..28542327 (25 bp)
AAGTGCAAGCATGAAGGCCCCGAAA
LOC_Os03g50120
Os.27979.1.S1_at--918--2991Chr03:28542327..28542351 (25 bp)
AATGATACCCATGACAGCCAGCACG
LOC_Os03g50120
Os.27979.1.S1_at--63--6811Chr03:28542397..28542421 (25 bp)
GTTTTGATGACTCTTTCGATCGGGA
LOC_Os03g50120
Os.27979.1.S1_at--707--8111Chr03:28542422..28542446 (25 bp)
GGACGATGGCTCTGATCCAGACGAA
LOC_Os03g50120
Os.27979.1.S1_at--55--4411Chr03:28542462..28542486 (25 bp)
GCCAAAGTGCGCACTAGGGCAGCAT
LOC_Os03g50120
Os.27979.1.S1_at--1068--671Chr03:28542559..28542583 (25 bp)
ATGACAGCGAGGATGTCCTGCCGTA
LOC_Os03g50120
Os.27979.1.S1_at--1156--6971Chr03:28542581..28542605 (25 bp)
GTACGAAGGGCAGCGCAGGCATATT
LOC_Os03g50120
Os.27979.1.S1_at--877--2431Chr03:28542612..28542636 (25 bp)
AAAAGGGCGACACCAGCACAGAGGA
LOC_Os03g50120
Os.27979.1.S1_at--358--2511Chr03:28542688..28542712 (25 bp)
AACTTCGATATTTTTCCATGTAGCG
LOC_Os03g50120
Os.27979.1.S1_at--608--7011Chr03:28542734..28542758 (25 bp)
GTACTATTTACTCGAGCACTTTATG
LOC_Os03g50120
Target Sequence 
GCAGCTTTGTGAACTTTCGACGCAACAAGGTCTGCTTGAAGTGCAAGCATGAAGGCCCCGAAAATGATACCCATGACAGC
CAGCACGGACANCAATAGGTGGAGGAACACGAGAGGGGCTGACAGAAGTAGAAGTTTTGATGACTCTTTCGATCGGGAGG
ACGATGGCTCTGATCCAGACGAAGGCGAGCGCAGACGTGCCAAAGTGCGCACTAGGGCAGCATCAACCCTGGGGAGATCC
ACTGGCAAGAGCAAAATTTTTGANTCGATTCATGAGGATGGTAACGGTAGGGAGGATGACAGCGAGGATGTCCTGCCGTA
CGAAGGGCAGCGCAGGCATATTGTGAGCAAAAGGGCGACACCAGCACAGAGGAGATTCACTGCTGGTAGAAGCNNNNGAG
GATATTTGATAGTCTGATAGATATATATAACTTCGATATTTTTCCATGTAGCGTATAGTTTCATTATGTACTGTGTACTA
TTTACTCGAGCACTTTATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27979.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis