Browse Element(s) Details


Os.50527.1.S1_a_at

Description gb:AK121625.1
DB_XREF= gi:37991248
TID=Os.50527.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.50527 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-119-B05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033046H08, full insert sequence.
FL= gb:AK063141.1 gb:AK121625.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5011011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g50070Os.3167.1.S1_at11/113+28510130..28514165expressed protein
LOC_Os03g50080OsAffx.3560.1.S1_at11/113+28514772..28516004immunophilin, putative, expressed
LOC_Os03g50090Os.3228.1.S1_a_at11/113+28516384..28520481transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os03g50100OsAffx.13432.1.S1_at11/113+28522812..28526290expressed protein
LOC_Os03g50110Os.50527.1.S1_a_at11/113+28534436..28535884expressed protein
LOC_Os03g50120Os.27979.1.S1_at11/113+28537788..28542823Zn-finger in Ran binding protein and others containing protein, expressed
LOC_Os03g50130Os.8549.1.S1_at11/113+28543533..28545513MAPEG family protein, expressed
LOC_Os03g50140Os.48351.1.S1_at7/113+28547492..28548294Plastocyanin-like domain containing protein, expressed
LOC_Os03g50150OsAffx.13433.1.S1_s_at11/113+28549742..28552983NB-ARC domain containing protein, expressed
LOC_Os03g50150OsAffx.13433.1.S1_at11/113+28549742..28552983NB-ARC domain containing protein, expressed
LOC_Os03g50160Os.4715.1.S1_at11/113+28553612..28555498Chemocyanin precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50527.1.S1_a_at--314--7491Chr03:28535012..28535036 (25 bp)
GTGGGCACTTTGGTTATCATGGAGA
LOC_Os03g50110
Os.50527.1.S1_a_at--768--411Chr03:28534997..28535021 (25 bp)
ATCATGGAGATGTCGCGATTGCGGC
LOC_Os03g50110
Os.50527.1.S1_a_at--581--2891Chr03:28534947..28534971 (25 bp)
AAGGTGCAGCCTGAGACTCTTCCTG
LOC_Os03g50110
Os.50527.1.S1_a_at--648--3991Chr03:28534867..28534891 (25 bp)
CGTGGTGCCACGTAGCAATGAGCAT
LOC_Os03g50110
Os.50527.1.S1_a_at--609--8511Chr03:28534838..28534862 (25 bp)
TGGCAAATGCCGTGCTGGATATATT
LOC_Os03g50110
Os.50527.1.S1_a_at--697--3191Chr03:28534786..28534810 (25 bp)
CAATGGCATTACCTACGGTGCTAAT
LOC_Os03g50110
Os.50527.1.S1_a_at--487--7511Chr03:28534632..28534656 (25 bp)
GTGGTTTTGGTGACGTGCTTCCGCC
LOC_Os03g50110
Os.50527.1.S1_a_at--673--4451Chr03:28534610..28534634 (25 bp)
GCCCTTCACCCCATGTGTATAAAAT
LOC_Os03g50110
Os.50527.1.S1_a_at--434--8431Chr03:28534532..28534556 (25 bp)
GGCCTTGCCTTAGTCAGCCTAATAT
LOC_Os03g50110
Os.50527.1.S1_a_at--217--10431Chr03:28534498..28534522 (25 bp)
TTATGCCTATGTACATCGTCTACGG
LOC_Os03g50110
Os.50527.1.S1_a_at--888--491Chr03:28534484..28534508 (25 bp)
ATCGTCTACGGATATTGCCTTTTAG
LOC_Os03g50110
Target Sequence 
GTGGGCACTTTGGTTATCATGGAGATGTCGCGATTGCGGCTGACGGAAGCCTTGATGGGATTGTGAAGGTGCAGCCTGAG
ACTCTTCCTGCCCTCCCCAGTATCGGGGACATTGCGGTTCACAGTGAGAATGGCAACGGCAAGGCCGTGGTGCCACGTAG
CAATGAGCATCACATGGCAAATGCCGTGCTGGATATATTTGAGGAGTGCTTGCGAGAGGTGAAGGCCAATGGCATTACCT
ACGGTGCTAATGTGAATGGGGGCAGTGAANTTGCAAGGCGATGGAGAGCACAGAGGATTGATGAGCTTGATGTGTTGAGC
CGGAGGCTAAGGTTGCTTGTTGAGGATGCTGCAGCGGCTGGTCGCTAAGCGGACATACTGGTGGTTTTGGTGACGTGCTT
CCGCCCTTCACCCCATGTGTATAAAATATTAAAATCTAGATTATTATGCTATATGCTTTTGTAGTTCCTCACTCAGCTTG
GGCCTTGCCTTAGTCAGCCTAATATGCCTATTATTTATGCCTATGTACATCGTCTACGGATATTGCCTTTTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50527.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis