Browse Element(s) Details


Os.4715.1.S1_at

Description gb:AK100153.1
DB_XREF= gi:32985362
TID=Os.4715.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.4715 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023015O19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023015O19, full insert sequence.
FL= gb:AK100153.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5016011/11Chemocyanin precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g50110Os.50527.1.S1_a_at11/113+28534436..28535884expressed protein
LOC_Os03g50120Os.27979.1.S1_at11/113+28537788..28542823Zn-finger in Ran binding protein and others containing protein, expressed
LOC_Os03g50130Os.8549.1.S1_at11/113+28543533..28545513MAPEG family protein, expressed
LOC_Os03g50140Os.48351.1.S1_at7/113+28547492..28548294Plastocyanin-like domain containing protein, expressed
LOC_Os03g50150OsAffx.13433.1.S1_s_at11/113+28549742..28552983NB-ARC domain containing protein, expressed
LOC_Os03g50150OsAffx.13433.1.S1_at11/113+28549742..28552983NB-ARC domain containing protein, expressed
LOC_Os03g50160Os.4715.1.S1_at11/113+28553612..28555498Chemocyanin precursor, putative, expressed
LOC_Os03g50180Os.49985.1.S1_at1/113+28567045..28573223retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g50190OsAffx.29687.2.S1_at10/113+28576520..28578055hypothetical protein
LOC_Os03g50190OsAffx.14332.1.S1_x_at1/113+28576520..28578055hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0009856biological_processpollination
GO:0048653biological_processanther development
GO:0031225cellular_componentanchored to membrane
GO:0048196cellular_componentextracellular matrix (sensu Magnoliophyta)
GO:0005489molecular_functionelectron transporter activity
GO:0005507molecular_functioncopper ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4715.1.S1_at--500--531Chr03:28553825..28553849 (25 bp)
ATCGAATGTAGTAGTGGCAATCTCT
LOC_Os03g50160
Os.4715.1.S1_at--982--8211Chr03:28553810..28553834 (25 bp)
GGCAATCTCTAAATATCCGGGAAGT
LOC_Os03g50160
Os.4715.1.S1_at--314--9271Chr03:28553795..28553819 (25 bp)
TCCGGGAAGTAGATCCAATAATTCT
LOC_Os03g50160
Os.4715.1.S1_at--14--9751Chr03:28553777..28553801 (25 bp)
TAATTCTGTCAGTGTCCTACGTTGC
LOC_Os03g50160
Os.4715.1.S1_at--754--7431Chr03:28553766..28553790 (25 bp)
GTGTCCTACGTTGCTGAATGACCGT
LOC_Os03g50160
Os.4715.1.S1_at--47--9911Chr03:28553760..28553784 (25 bp)
TACGTTGCTGAATGACCGTCTTCGT
LOC_Os03g50160
Os.4715.1.S1_at--1090--5251Chr03:28553751..28553775 (25 bp)
GAATGACCGTCTTCGTGTTTAGGCC
LOC_Os03g50160
Os.4715.1.S1_at--111--7151Chr03:28553743..28553767 (25 bp)
GTCTTCGTGTTTAGGCCTCTGCTTT
LOC_Os03g50160
Os.4715.1.S1_at--654--8411Chr03:28553730..28553754 (25 bp)
GGCCTCTGCTTTGTTGCAGGTTAGT
LOC_Os03g50160
Os.4715.1.S1_at--76--4891Chr03:28553723..28553747 (25 bp)
GCTTTGTTGCAGGTTAGTTGATTGT
LOC_Os03g50160
Os.4715.1.S1_at--680--9811Chr03:28553640..28553664 (25 bp)
TAAAAGCCAAACAGCTGCGTTCTGG
LOC_Os03g50160
Target Sequence 
ATCGAATGTAGTAGTGGCAATCTCTAAATATCCGGGAAGTAGATCCAATAATTCTGTCAGTGTCCTACGTTGCTGAATGA
CCGTCTTCGTGTTTAGGCCTCTGCTTTGTTGCAGGTTAGTTGATTGTTGGCAAGTATAGAGAGGAATATATGATTTATGT
GATGTGTATTTTGAGAAGAATTTAATAAAAGCCAAACAGCTGCGTTCTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4715.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis