Browse Element(s) Details


OsAffx.29687.2.S1_at

Description tigr:9631.m04901
TID=OsAffx.29687.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5019010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g50150OsAffx.13433.1.S1_s_at11/113+28549742..28552983NB-ARC domain containing protein, expressed
LOC_Os03g50150OsAffx.13433.1.S1_at11/113+28549742..28552983NB-ARC domain containing protein, expressed
LOC_Os03g50160Os.4715.1.S1_at11/113+28553612..28555498Chemocyanin precursor, putative, expressed
LOC_Os03g50180Os.49985.1.S1_at1/113+28567045..28573223retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g50190OsAffx.29687.2.S1_at10/113+28576520..28578055hypothetical protein
LOC_Os03g50190OsAffx.14332.1.S1_x_at1/113+28576520..28578055hypothetical protein
LOC_Os03g50210Os.22831.1.S1_at11/113+28580817..28582548expressed protein
LOC_Os03g50220Os.52754.2.S1_at11/113+28581945..28585449Tat binding protein 1 containing protein, expressed
LOC_Os03g50220Os.52754.1.S1_x_at11/113+28581945..28585449Tat binding protein 1 containing protein, expressed
LOC_Os03g50230NANA3+28587672..28592810Protein kinase domain containing protein, expressed
LOC_Os03g50240OsAffx.30187.3.S1_at3/113+28594290..28594523hypothetical protein
LOC_Os03g50250OsAffx.13436.1.S1_at11/113+28596259..28598743Luminal binding protein 5 precursor, putative, expressed
LOC_Os03g50260NANA3+28599180..28599434hypothetical protein
LOC_Os03g50270Os.38416.1.A1_at11/113+28600283..28602236expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29687.2.S1_at--170--3371Chr03:28576728..28576752 (25 bp)
CACCGGTGACAGTGGCGCGGATTGG
LOC_Os03g50190
OsAffx.29687.2.S1_at--788--1091Chr03:28576738..28576762 (25 bp)
AGTGGCGCGGATTGGAGCTGGAGCC
LOC_Os03g50190
OsAffx.29687.2.S1_at--578--9351NONE
TCGCATCTCTGATCGCGGCTAAAAA
NONE
OsAffx.29687.2.S1_at--29--8851Chr03:28577864..28577883 (20 bp)
TGATCGCGGCTAAAAACGCAGTTAG
LOC_Os03g50190
OsAffx.29687.2.S1_at--904--2571Chr03:28577873..28577897 (25 bp)
AACGCAGTTAGCGAGCGGAGCGTAA
LOC_Os03g50190
OsAffx.29687.2.S1_at--1046--3911Chr03:28577893..28577917 (25 bp)
CGTAAAGGTGGGTGTGCCTCGCTTC
LOC_Os03g50190
OsAffx.29687.2.S1_at--831--2311Chr03:28577896..28577920 (25 bp)
AAAGGTGGGTGTGCCTCGCTTCCGT
LOC_Os03g50190
OsAffx.29687.2.S1_at--268--7471Chr03:28577904..28577928 (25 bp)
GTGTGCCTCGCTTCCGTGCAGCGAG
LOC_Os03g50190
OsAffx.29687.2.S1_at--995--4151Chr03:28577977..28578001 (25 bp)
CGCCTCGCGTTCTGGAAGACGTGAG
LOC_Os03g50190
OsAffx.29687.2.S1_at--1002--8911Chr03:28577998..28578022 (25 bp)
TGAGCTGTGGCATGCTGGCAATCGC
LOC_Os03g50190
OsAffx.29687.2.S1_at--43--4731Chr03:28578001..28578025 (25 bp)
GCTGTGGCATGCTGGCAATCGCCCG
LOC_Os03g50190
Target Sequence 
CACCGGTGACAGTGGCGCGGATTGGAGCTGGAGCCGGAGTCGTCGGAGTGGAAGGAGTTCCTGCTCGGGAATCAAGGTCG
GCCTTCTGCACGGCGCGCGTTCTCGTCCTCGCATCTCTGATCGCGGCTAAAAACGCAGTTAGCGAGCGGAGCGTAAAGGT
GGGTGTGCCTCGCTTCCGTGCAGCGAGCGCCGTCCGCCGCCGAGGCGTCGGCTGCGCGGTTGCGTGGCGCCGTCGCGCCT
CGCGTTCTGGAAGACGTGAGCTGTGGCATGCTGGCAATCGCCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29687.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis