Browse Element(s) Details


Os.22831.1.S1_at

Description gb:AK104418.1
DB_XREF= gi:32989627
TID=Os.22831.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.22831 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-205-A12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-205-A12, full insert sequence.
FL= gb:AK099364.1 gb:AK060065.1 gb:AK104418.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5021011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g50180Os.49985.1.S1_at1/113+28567045..28573223retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g50190OsAffx.29687.2.S1_at10/113+28576520..28578055hypothetical protein
LOC_Os03g50190OsAffx.14332.1.S1_x_at1/113+28576520..28578055hypothetical protein
LOC_Os03g50210Os.22831.1.S1_at11/113+28580817..28582548expressed protein
LOC_Os03g50220Os.52754.2.S1_at11/113+28581945..28585449Tat binding protein 1 containing protein, expressed
LOC_Os03g50220Os.52754.1.S1_x_at11/113+28581945..28585449Tat binding protein 1 containing protein, expressed
LOC_Os03g50230NANA3+28587672..28592810Protein kinase domain containing protein, expressed
LOC_Os03g50240OsAffx.30187.3.S1_at3/113+28594290..28594523hypothetical protein
LOC_Os03g50250OsAffx.13436.1.S1_at11/113+28596259..28598743Luminal binding protein 5 precursor, putative, expressed
LOC_Os03g50260NANA3+28599180..28599434hypothetical protein
LOC_Os03g50270Os.38416.1.A1_at11/113+28600283..28602236expressed protein
LOC_Os03g50280OsAffx.13437.1.S1_at10/113+28604454..28606583expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22831.1.S1_at--220--4431Chr03:28581963..28581987 (25 bp)
GCCATGGAGCTCTCGCGAGGCGAAT
LOC_Os03g50210
Os.22831.1.S1_at--342--2111Chr03:28582036..28582060 (25 bp)
ACAGGGCCGACGAAGAGACGCTCGC
LOC_Os03g50210
Os.22831.1.S1_at--316--8891Chr03:28582154..28582178 (25 bp)
TGAGGATGATGAAGTGGTCCGCCAT
LOC_Os03g50210
Os.22831.1.S1_at--984--9291Chr03:28582171..28582195 (25 bp)
TCCGCCATGAGATCACTGCAGAGAG
LOC_Os03g50210
Os.22831.1.S1_at--1067--5871Chr03:28582223..28582247 (25 bp)
GAGCGTGCCGGTATCAGTCAGAACA
LOC_Os03g50210
Os.22831.1.S1_at--353--7391Chr03:28582254..28582278 (25 bp)
GTGAGTTAGCTGCAACCAGATGGCA
LOC_Os03g50210
Os.22831.1.S1_at--145--5211Chr03:28582305..28582329 (25 bp)
GAATTCGTGATATTAGCAGCTGCTA
LOC_Os03g50210
Os.22831.1.S1_at--1104--171Chr03:28582334..28582358 (25 bp)
ATTTTTGCAGATTCATCGTTCGTTA
LOC_Os03g50210
Os.22831.1.S1_at--999--9331Chr03:28582349..28582373 (25 bp)
TCGTTCGTTAGATCCTAGGCCTGTA
LOC_Os03g50210
Os.22831.1.S1_at--1098--4471Chr03:28582367..28582391 (25 bp)
GCCTGTAGGCCATTGCATGCATGTA
LOC_Os03g50210
Os.22831.1.S1_at--7--6571Chr03:28582432..28582456 (25 bp)
GATTCAGATTTTGTTCATCGGTTAG
LOC_Os03g50210
Target Sequence 
GCCATGGAGCTCTCGCGAGGCGAATCCGGGGGCCGCGACGACGACAGGAGACGGCCGNGAGGCGCGCAGTTCGACAGGGC
CGACGAAGAGACGCTCGCCGGCGGCGAGGTTTCGGGTGATGGCAANAAATCTGGCAGGATCAGACGTGCCANCCTCGGCC
GGAACTACAGTTCAGAGATCGAGGATTCAGCTGAGGATGATGAAGTGGTCCGCCATGAGATCACTGCAGAGAGCGAGGTG
AAACCGCGGGGTCTGACCAGGAGCGTGCCGGTATCAGTCAGAACAAAGAGGGTGAGTTAGCTGCAACCAGATGGCAACAA
GAGTGATGGGAGATGATTTCTTGAATTCGTGATATTAGCAGCTGCTATTATATTTTTGCAGATTCATCGTTCGTTAGATC
CTAGGCCTGTAGGCCATTGCATGCATGTAATTAAATGGAGCCAAACAAAAAAAAANNAAAAAAAAANCTTGATTCAGATT
TTGTTCATCGGTTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22831.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis