Browse Element(s) Details


Os.3167.1.S1_at

Description gb:AK066216.1
DB_XREF= gi:32976234
TID=Os.3167.1
CNT=19
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.3167 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013052J02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013052J02, full insert sequence.
FL= gb:AK066216.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5007011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g50010Os.20280.1.S1_at11/113+28482271..28490414chloroplast outer membrane translocon subunit, putative, expressed
LOC_Os03g50020Os.54774.1.S1_x_at1/113+28494424..28495071retrotransposon, putative, centromere-specific
LOC_Os03g50030Os.3160.1.S1_at11/113+28497524..28499113Phospholipase A2, putative, expressed
LOC_Os03g50040Os.27499.2.S1_a_at11/113+28501125..28504572phytanoyl-CoA dioxygenase, putative, expressed
LOC_Os03g50040Os.23310.1.A1_s_at11/113+28501125..28504572phytanoyl-CoA dioxygenase, putative, expressed
LOC_Os03g50040Os.23310.1.A1_x_at2/113+28501125..28504572phytanoyl-CoA dioxygenase, putative, expressed
LOC_Os03g50050OsAffx.13431.1.S1_at11/113+28506013..28507518F-box domain containing protein, expressed
LOC_Os03g50050OsAffx.28800.1.S1_x_at4/113+28506013..28507518F-box domain containing protein, expressed
LOC_Os03g50070Os.3167.1.S1_at11/113+28510130..28514165expressed protein
LOC_Os03g50080OsAffx.3560.1.S1_at11/113+28514772..28516004immunophilin, putative, expressed
LOC_Os03g50090Os.3228.1.S1_a_at11/113+28516384..28520481transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os03g50100OsAffx.13432.1.S1_at11/113+28522812..28526290expressed protein
LOC_Os03g50110Os.50527.1.S1_a_at11/113+28534436..28535884expressed protein
LOC_Os03g50120Os.27979.1.S1_at11/113+28537788..28542823Zn-finger in Ran binding protein and others containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3167.1.S1_at--936--5871Chr03:28513589..28513613 (25 bp)
GAGCCCTGCCTGGATGGTTCAAGAT
LOC_Os03g50070
Os.3167.1.S1_at--658--10511Chr03:28513606..28513630 (25 bp)
TTCAAGATGGGCTTCCTCTTCGAGC
LOC_Os03g50070
Os.3167.1.S1_at--74--9531Chr03:28513637..28513661 (25 bp)
TCTACAATCGTGTACCGCAACGTGA
LOC_Os03g50070
Os.3167.1.S1_at--939--5151Chr03:28513653..28513677 (25 bp)
GCAACGTGATCCTGTCAGCTGATGA
LOC_Os03g50070
Os.3167.1.S1_at--933--6411Chr03:28513685..28513709 (25 bp)
GATCTCTAGCGATTGTTGTGTACAA
LOC_Os03g50070
Os.3167.1.S1_at--507--1111Chr03:28513897..28513921 (25 bp)
AGTGATTTCTTTTCGCTTTGGTTAT
LOC_Os03g50070
Os.3167.1.S1_at--810--5511Chr03:28513947..28513971 (25 bp)
GAAAACATTACGTTCCCTTCAGCTC
LOC_Os03g50070
Os.3167.1.S1_at--1081--9311Chr03:28513960..28513984 (25 bp)
TCCCTTCAGCTCTGTTTCTAAGCTA
LOC_Os03g50070
Os.3167.1.S1_at--718--10571Chr03:28513975..28513999 (25 bp)
TTCTAAGCTATCCTTTTGGTCCCTT
LOC_Os03g50070
Os.3167.1.S1_at--958--5331Chr03:28514099..28514123 (25 bp)
GAAGTTTGTACTCCTACACATTTTG
LOC_Os03g50070
Os.3167.1.S1_at--256--10791Chr03:28514132..28514156 (25 bp)
TTGTACAGAGTAGCTACTCCCTCCG
LOC_Os03g50070
Target Sequence 
GAGCCCTGCCTGGATGGTTCAAGATGGGCTTCCTCTTCGAGCTCCCGCTCTACAATCGTGTACCGCAACGTGATCCTGTC
AGCTGATGATATCAGTGATCTCTAGCGATTGTTGTGTACAATGTGTGTAGTATAAGATACTTCCTCCGTTTCACAATGGA
AGTCATTTTAGCATTTTCCACATTCATATTGATGTTAATGAATTTAGATAGATATATATGTCTAGATATATTAACATCAA
TATGAATATGAAAAATGCTAGAATGACTTATATTGTAAAACGGAGGGAGGACATTGTTATTGTCGATAAGTGATTTCTTT
TCGCTTTGGTTATTAGGGCAGTGAAATTGTATCCACGTGAAAACATTACGTTCCCTTCAGCTCTGTTTCTAAGCTATCCT
TTTGGTCCCTTTTTAAAATTTCCATGATATAAACAGCCAACAGCCATTGANNNNGNTTATTTGTCTGANCAAAACACCTG
ATATGATTGACAATGGGGTCAGCACTAAACGAAGTTTGTACTCCTACACATTTTGACAATTATTTGTACAGAGTAGCTAC
TCCCTCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3167.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis