Browse Element(s) Details


Os.17255.1.S1_at

Description gb:AK121918.1
DB_XREF= gi:37991541
TID=Os.17255.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17255 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033106D06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033106D06, full insert sequence.
FL= gb:AK121918.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6179011/11RNA 3'-terminal phosphate cyclase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g61740Os.27231.1.S1_at10/113+34941549..34943118Sex determination protein tasselseed 2, putative, expressed
LOC_Os03g61750Os.5885.1.S1_at11/113+34943482..34946653expressed protein
LOC_Os03g61750OsAffx.23536.1.S1_s_at1/113+34943482..34946653expressed protein
LOC_Os03g61760Os.8121.1.S1_at11/113+34946980..34954660SBP domain containing protein, expressed
LOC_Os03g61760Os.8121.1.S2_at11/113+34946980..34954660SBP domain containing protein, expressed
LOC_Os03g61770OsAffx.13574.1.S1_at10/113+34957123..34959488hypothetical protein
LOC_Os03g61780Os.49920.2.S1_at10/113+34964871..34967693expressed protein
LOC_Os03g61780Os.53362.2.S1_at1/113+34964871..34967693expressed protein
LOC_Os03g61790Os.17255.1.S1_at11/113+34967935..34970720RNA 3'-terminal phosphate cyclase family protein, expressed
LOC_Os03g61800Os.48315.1.S1_at11/113+34976288..34980561glycoside hydrolase family 28 protein, putative, expressed
LOC_Os03g61810Os.53628.2.S1_at11/113+34980933..34983588Guanine deaminase, putative, expressed
LOC_Os03g61810Os.53628.1.S1_x_at11/113+34980933..34983588Guanine deaminase, putative, expressed
LOC_Os03g61820Os.52839.1.S1_x_at11/113+34985543..34991069Flap endonuclease-1b, putative, expressed
LOC_Os03g61820Os.7214.1.S1_at11/113+34985543..34991069Flap endonuclease-1b, putative, expressed
LOC_Os03g61840Os.16408.1.S1_at1/113+34995699..34997516hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003963molecular_functionRNA-3'-phosphate cyclase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17255.1.S1_at--924--6811Chr03:34968501..34968525 (25 bp)
GTTTATTCTATGTGCTCTAAGCCCA
LOC_Os03g61790
Os.17255.1.S1_at--856--9511Chr03:34968486..34968510 (25 bp)
TCTAAGCCCACCTGATGTGTCAAAG
LOC_Os03g61790
Os.17255.1.S1_at--227--7111Chr03:34968451..34968475 (25 bp)
GTCAGTTGACACCATACGCTATCGA
LOC_Os03g61790
Os.17255.1.S1_at--316--2051Chr03:34968423..34968447 (25 bp)
ACTTCGCAACATACGGGATTTCCTT
LOC_Os03g61790
Os.17255.1.S1_at--1026--5231Chr03:34968324..34968348 (25 bp)
GAATCTTGCTCGGAAGACTTCGTGA
LOC_Os03g61790
Os.17255.1.S1_at--270--2751Chr03:34968256..34968280 (25 bp)
AAGAACACTGGGTCTCCTGTAAGCT
LOC_Os03g61790
Os.17255.1.S1_at--583--7171Chr03:34968245..34968269 (25 bp)
GTCTCCTGTAAGCTCTGTTTGTAAC
LOC_Os03g61790
Os.17255.1.S1_at--984--7851Chr03:34968200..34968224 (25 bp)
GGTTTCATTTGCTGCCTGGGCTAAA
LOC_Os03g61790
Os.17255.1.S1_at--12--6531Chr03:34968141..34968165 (25 bp)
GATTTGACCCAAGCATTTTATACCT
LOC_Os03g61790
Os.17255.1.S1_at--118--3571Chr03:34968099..34968123 (25 bp)
CATACCATCATGTCTTGTCACACTT
LOC_Os03g61790
Os.17255.1.S1_at--679--7091Chr03:34968083..34968107 (25 bp)
GTCACACTTTTGTATCTCCTTTATC
LOC_Os03g61790
Target Sequence 
GTTTATTCTATGTGCTCTAAGCCCACCTGATGTGTCAAAGGTTCGTGTTGGTCAGTTGACACCATACGCTATCGAAACAC
TTCGCAACATACGGGATTTCCTTGATGTCAAGTTCATTATCAAGCCTGATCCAAATTCAAATACTGTTACATTGAAATGT
GTTGGTGCTGGAGTGAAGAATCTTGCTCGGAAGACTTCGTGAACAACAGGATGATGAATCCCATCAAAGGATGGATGAGT
GCAGCAAGAACACTGGGTCTCCTGTAAGCTCTGTTTGTAACTGCAAAGCNACAAGTTGAGAGGTTTCATTTGCTGCCTGG
GCTAAAATTTTGTCGAAGTGCGTGGTATATGTCATAGGTAGATTTGACCCAAGCATTTTATACCTGCTGGGATTTGTCTG
ATCATACCATCATGTCTTGTCACACTTTTGTATCTCCTTTATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17255.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis