Browse Element(s) Details


Os.53628.2.S1_at

Description gb:AK103800.1
DB_XREF= gi:32989009
TID=Os.53628.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53628 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-026-F08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033146A16, full insert sequence.
FL= gb:AK103800.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6181011/11Guanine deaminase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g61770OsAffx.13574.1.S1_at10/113+34957123..34959488hypothetical protein
LOC_Os03g61780Os.49920.2.S1_at10/113+34964871..34967693expressed protein
LOC_Os03g61780Os.53362.2.S1_at1/113+34964871..34967693expressed protein
LOC_Os03g61790Os.17255.1.S1_at11/113+34967935..34970720RNA 3'-terminal phosphate cyclase family protein, expressed
LOC_Os03g61800Os.48315.1.S1_at11/113+34976288..34980561glycoside hydrolase family 28 protein, putative, expressed
LOC_Os03g61810Os.53628.2.S1_at11/113+34980933..34983588Guanine deaminase, putative, expressed
LOC_Os03g61810Os.53628.1.S1_x_at11/113+34980933..34983588Guanine deaminase, putative, expressed
LOC_Os03g61820Os.52839.1.S1_x_at11/113+34985543..34991069Flap endonuclease-1b, putative, expressed
LOC_Os03g61820Os.7214.1.S1_at11/113+34985543..34991069Flap endonuclease-1b, putative, expressed
LOC_Os03g61840Os.16408.1.S1_at1/113+34995699..34997516hypothetical protein
LOC_Os03g61850NANA3+35004591..35007446transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0008270molecular_functionzinc ion binding
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53628.2.S1_at--305--8171Chr03:34981592..34981616 (25 bp)
GGAACAATTCACTGAGACACTGATT
LOC_Os03g61810
Os.53628.2.S1_at--797--3851Chr03:34981581..34981605 (25 bp)
CTGAGACACTGATTGGCAGCAGTAT
LOC_Os03g61810
Os.53628.2.S1_at--998--6911Chr03:34981560..34981584 (25 bp)
GTATGACTATTGTATTCTTTGCCAG
LOC_Os03g61810
Os.53628.2.S1_at--873--5691Chr03:34981556..34981580 (25 bp)
GACTATTGTATTCTTTGCCAGCCAA
LOC_Os03g61810
Os.53628.2.S1_at--265--10691Chr03:34981542..34981566 (25 bp)
TTGCCAGCCAATTTGGGCCGATAAT
LOC_Os03g61810
Os.53628.2.S1_at--1043--211Chr03:34981532..34981556 (25 bp)
ATTTGGGCCGATAATGCATTTAACA
LOC_Os03g61810
Os.53628.2.S1_at--997--2071Chr03:34981510..34981534 (25 bp)
ACATTAGTTTCTTTCCATTGTTTGG
LOC_Os03g61810
Os.53628.2.S1_at--915--9233Chr02:31588109..31588259 (25 bp)
TCCATTGTTTGGTTATCTTTTCACA
NONE
Os.53628.2.S1_at--381--2291Chr03:34981468..34981492 (25 bp)
AAATGTTTTTCTGTGCTATAGGCTT
LOC_Os03g61810
Os.53628.2.S1_at--940--10371Chr03:34981462..34981486 (25 bp)
TTTTCTGTGCTATAGGCTTGCAAAA
LOC_Os03g61810
Os.53628.2.S1_at--873--231Chr03:34980952..34980976 (25 bp)
ATATATGTTACTCTCATTATGAGGA
LOC_Os03g61810
Target Sequence 
GGAACAATTCACTGAGACACTGATTGGCAGCAGTATGACTATTGTATTCTTTGCCAGCCAATTTGGGCCGATAATGCATT
TAACATTAGTTTCTTTCCATTGTTTGGTTATCTTTTCACATAATAAATGTTTTTCTGTGCTATAGGCTTGCAAAAAGCTT
GGAAAAATTGAGTTGTCAGACTGTGAAATGTATGCATCATGTGAACCTTGCCCAATGTGTTTCGGCGCTGTGCATCTATC
ACGGATTAAGAGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCTATTGCCATTGGATTCGATGACTTCATTGCTGATGCTT
TGAGGGGAACTGCTTACTACCAGAAGGCCAACTTGGAGATAAGGCGGGCAGATGGCAATGGAGCCCTGATTGCTGAACAA
GTCTTCGAGAACACTAAGGAGAAGTTTCGGATGTACTAATTGTAAGTAAATACATTGTGGGATTTCACATCGCAAAAGTT
CCAAACGTTCAGAAGTCAGAAAGAATAATGTAACCTTCGGCATTCTGCCATTAGTGGACCATAAGCTATCAATTTAAATA
TATGTTACTCTCATTATGAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53628.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis