Browse Element(s) Details


Os.27231.1.S1_at

Description gb:AK068662.1
DB_XREF= gi:32978679
TID=Os.27231.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27231 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013161B14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013161B14, full insert sequence.
FL= gb:AK068662.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6174010/11Sex determination protein tasselseed 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g61710Os.6667.1.S1_at11/113+34913653..34919176Galactokinase, putative, expressed
LOC_Os03g61720Os.49265.1.S2_a_at11/113+34924132..34929693Acyltransferase family protein, expressed
LOC_Os03g61720Os.49265.1.S1_at11/113+34924132..34929693Acyltransferase family protein, expressed
LOC_Os03g61730Os.23659.1.S1_at11/113+34930793..34936664DnaJ domain containing protein, expressed
LOC_Os03g61740Os.27231.1.S1_at10/113+34941549..34943118Sex determination protein tasselseed 2, putative, expressed
LOC_Os03g61750Os.5885.1.S1_at11/113+34943482..34946653expressed protein
LOC_Os03g61750OsAffx.23536.1.S1_s_at1/113+34943482..34946653expressed protein
LOC_Os03g61760Os.8121.1.S1_at11/113+34946980..34954660SBP domain containing protein, expressed
LOC_Os03g61760Os.8121.1.S2_at11/113+34946980..34954660SBP domain containing protein, expressed
LOC_Os03g61770OsAffx.13574.1.S1_at10/113+34957123..34959488hypothetical protein
LOC_Os03g61780Os.49920.2.S1_at10/113+34964871..34967693expressed protein
LOC_Os03g61780Os.53362.2.S1_at1/113+34964871..34967693expressed protein
LOC_Os03g61790Os.17255.1.S1_at11/113+34967935..34970720RNA 3'-terminal phosphate cyclase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27231.1.S1_at--867--4171Chr03:34942653..34942677 (25 bp)
CCCACAACGTGCTCCGCGGGAAGGT
LOC_Os03g61740
Os.27231.1.S1_at--571--8111Chr03:34942690..34942714 (25 bp)
GGACGTCGCGGAGGCCATGCTCTTC
LOC_Os03g61740
Os.27231.1.S1_at--440--5551Chr03:34942815..34942839 (25 bp)
GACACGGACCGACGCCATTAATTTA
LOC_Os03g61740
Os.27231.1.S1_at--278--10311Chr03:34942872..34942896 (25 bp)
TTTACCGCGTTTTGACTGGAAAGAT
LOC_Os03g61740
Os.27231.1.S1_at--124--5571Chr03:34942890..34942914 (25 bp)
GAAAGATGATCCCTTTTTCTTATTA
LOC_Os03g61740
Os.27231.1.S1_at--473--10551Chr03:34942906..34942930 (25 bp)
TTCTTATTAGGCGATCAATGGTGAC
LOC_Os03g61740
Os.27231.1.S1_at--192--8951Chr03:34942927..34942951 (25 bp)
TGACGTGGTGTCATAGCATGTGGTT
LOC_Os03g61740
Os.27231.1.S1_at--403--732Chr03:34942985..34943009 (25 bp)
ATGTTGGTTGCCATTGCATCTCATC
LOC_Os03g61740
Os.27231.1.S1_at--240--6331Chr03:34943012..34943036 (25 bp)
GATGCAACCTTTTGGACTCAGTGGA
LOC_Os03g61740
Os.27231.1.S1_at--683--5711Chr03:34943026..34943050 (25 bp)
GACTCAGTGGAGCATGTTTTCATGT
LOC_Os03g61740
Os.27231.1.S1_at--744--3171NONE
AATTGGTGTTTATGTCTCTTTTGCG
NONE
Target Sequence 
CCCACAACGTGCTCCGCGGGAAGGTGCTCAAGGCGGCGGACGTCGCGGAGGCCATGCTCTTCCTCGCCTCCGACCAGGCC
GCCTTCGTCAGCGGCCACAACCTCGTNGTNGANGGCGCCACCACCGCCGTCAACTACGCCGTGCTCCAGTCCGTCGGCCT
GTGACACGGACCGACGCCATTAATTTAATTTAAAAGAAAAACATATCTTTACGATAAATTTTACCGCGTTTTGACTGGAA
AGATGATCCCTTTTTCTTATTAGGCGATCAATGGTGACGTGGTGTCATAGCATGTGGTTTGTAAAATTGTGTTTGTTCGT
TTGTAATATTATATGTTGGTTGCCATTGCATCTCATCATGATGCAACCTTTTGGACTCAGTGGAGCATGTTTTCATGTAA
CAATTTTNGAGTTTTGAATTTNNAAANNNNNNNNGCATAATTGGTGTTTATGTCTCTTTTGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27231.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis