Browse Element(s) Details


Os.49265.1.S1_at

Description gb:AK062843.1
DB_XREF= gi:32972861
TID=Os.49265.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49265 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-305-G05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-107-H07, full insert sequence.
FL= gb:AK064956.1 gb:AK062843.1 gb:AK120398.1 gb:AK067486.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6172011/11Acyltransferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g61690OsAffx.13573.1.S1_at11/113+34899901..34903056protein phosphatase 2C family protein, putative, expressed
LOC_Os03g61690Os.25223.1.A1_at10/113+34899901..34903056protein phosphatase 2C family protein, putative, expressed
LOC_Os03g61700Os.6881.1.S1_at11/113+34904449..34911678expressed protein
LOC_Os03g61700Os.20337.1.S1_x_at1/113+34904449..34911678expressed protein
LOC_Os03g61710Os.6667.1.S1_at11/113+34913653..34919176Galactokinase, putative, expressed
LOC_Os03g61720Os.49265.1.S2_a_at11/113+34924132..34929693Acyltransferase family protein, expressed
LOC_Os03g61720Os.49265.1.S1_at11/113+34924132..34929693Acyltransferase family protein, expressed
LOC_Os03g61730Os.23659.1.S1_at11/113+34930793..34936664DnaJ domain containing protein, expressed
LOC_Os03g61740Os.27231.1.S1_at10/113+34941549..34943118Sex determination protein tasselseed 2, putative, expressed
LOC_Os03g61750Os.5885.1.S1_at11/113+34943482..34946653expressed protein
LOC_Os03g61750OsAffx.23536.1.S1_s_at1/113+34943482..34946653expressed protein
LOC_Os03g61760Os.8121.1.S1_at11/113+34946980..34954660SBP domain containing protein, expressed
LOC_Os03g61760Os.8121.1.S2_at11/113+34946980..34954660SBP domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0048234biological_processmale gamete generation (sensu Magnoliophyta)
GO:0005739cellular_componentmitochondrion
GO:0016020cellular_componentmembrane
GO:0003841molecular_function1-acylglycerol-3-phosphate O-acyltransferase activity
GO:0008415molecular_functionacyltransferase activity
GO:0008514molecular_functionorganic anion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49265.1.S1_at--494--1831Chr03:34927261..34927285 (25 bp)
ACGCCCATGCTTGTGCACAAACAGA
LOC_Os03g61720
Os.49265.1.S1_at--216--676Chr09:5034616..5034638 (23 bp)
ATGAGCGTAGCTCAACTAGTTAGGG
NONE
Os.49265.1.S1_at--854--8871Chr03:34927395..34927419 (25 bp)
TGATGGATGGCTTGCCACGCGCCTA
LOC_Os03g61720
Os.49265.1.S1_at--680--2091Chr03:34927441..34927465 (25 bp)
ACATCCCCTGTACGTTTGTACATAC
LOC_Os03g61720
Os.49265.1.S1_at--544--331Chr03:34927462..34927486 (25 bp)
ATACTTTTGCAGTGGTAGAGCTAAC
LOC_Os03g61720
Os.49265.1.S1_at--798--10011Chr03:34927477..34927501 (25 bp)
TAGAGCTAACTCAAGGGCAGGTCGG
LOC_Os03g61720
Os.49265.1.S1_at--772--4891Chr03:34927508..34927532 (25 bp)
GCTTAGGCTCTGTCGCTGGCGTCTC
LOC_Os03g61720
Os.49265.1.S1_at--679--3911Chr03:34927523..34927547 (25 bp)
CTGGCGTCTCGGCTGTAGATAGCAT
LOC_Os03g61720
Os.49265.1.S1_at--246--1831Chr03:34927582..34927606 (25 bp)
ACGCTAATACTTGTCTGGGCTTCAT
LOC_Os03g61720
Os.49265.1.S1_at--681--8651Chr03:34927597..34927621 (25 bp)
TGGGCTTCATGGCATCTTTGCTCCA
LOC_Os03g61720
Os.49265.1.S1_at--896--9091Chr03:34927615..34927639 (25 bp)
TGCTCCACCACTGTACTTTTGTATA
LOC_Os03g61720
Target Sequence 
ACGCCCATGCTTGTGCACAAACAGAATAAAATTTATTATCTACAATAGTATATACTACTACGTGATTAATAAATACATGT
ACATGTATATTTACATCTTACGAAATGAGCGTAGCTCAACTAGTTAGGGGCTGCTGATGGATGGCTTGCCACGCGCCTAG
CACGGTCACCTCACCTCCTTACATCCCCTGTACGTTTGTACATACTTTTGCAGTGGTAGAGCTAACTCAAGGGCAGGTCG
GGCGGTCGCTTAGGCTCTGTCGCTGGCGTCTCGGCTGTAGATAGCATTTGATGTCCCAAAAAATTAGTTGATTACTGAAA
AACGCTAATACTTGTCTGGGCTTCATGGCATCTTTGCTCCACCACTGTACTTTTGTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49265.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis