Browse Element(s) Details


Os.10599.1.S1_x_at

Description gb:NM_191440.1
DB_XREF= gi:34909963
GEN=P0490D09.6
TID=Os.10599.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.10599 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0490D09.6 (P0490D09.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0490D09.6 (P0490D09.6), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5664010/11transcription factor jumonji, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g56600Os.11758.1.S1_at11/111+32979330..32983443Signal recognition particle 54 kDa protein 2, putative, expressed
LOC_Os01g56610Os.32439.1.S1_at11/111+32983604..32985329Homocysteine S-methyltransferase 4, putative, expressed
LOC_Os01g56620OsAffx.21592.2.S1_at11/111+32987548..32994030tRNA pseudouridine synthase D family protein, expressed
LOC_Os01g56620OsAffx.21592.1.S1_x_at6/111+32987548..32994030tRNA pseudouridine synthase D family protein, expressed
LOC_Os01g56620Os.49125.1.S1_s_at1/111+32987548..32994030tRNA pseudouridine synthase D family protein, expressed
LOC_Os01g56630Os.11030.1.S1_at11/111+32996390..33003255Dymeclin, putative, expressed
LOC_Os01g56630Os.11030.2.S1_x_at11/111+32996390..33003255Dymeclin, putative, expressed
LOC_Os01g56640Os.46124.1.S1_at11/111+33002828..33008255transcription factor jumonji, putative, expressed
LOC_Os01g56640Os.52837.1.S1_at11/111+33002828..33008255transcription factor jumonji, putative, expressed
LOC_Os01g56640Os.52837.1.S1_x_at11/111+33002828..33008255transcription factor jumonji, putative, expressed
LOC_Os01g56640Os.10599.1.S1_x_at10/111+33002828..33008255transcription factor jumonji, putative, expressed
LOC_Os01g56650OsAffx.9407.1.S1_at11/111+33009831..33010235hypothetical protein
LOC_Os01g56660OsAffx.21591.1.S1_at11/111+33020608..33023334hypothetical protein
LOC_Os01g56670Os.17630.1.S1_s_at11/111+33025872..33036119Glycosyl hydrolase family 47 protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10599.1.S1_x_at--52--571NONE
ATCCTGAGCAGGTGTCCTGAGCAAT
NONE
Os.10599.1.S1_x_at--891--1251Chr01:33004610..33004634 (25 bp)
AGATTCACCACTGCAAACTCTGGAA
LOC_Os01g56640
Os.10599.1.S1_x_at--39--2551Chr01:33004560..33004584 (25 bp)
AACTCATCTCACTGGTTCACAACAG
LOC_Os01g56640
Os.10599.1.S1_x_at--542--331Chr01:33004405..33004429 (25 bp)
ATAATTTTACCACTCAAACCGCTTG
LOC_Os01g56640
Os.10599.1.S1_x_at--138--1351Chr01:33004376..33004398 (23 bp)
AGAGTATGCTGCTTGCCATGGCGCG
LOC_Os01g56640
Os.10599.1.S1_x_at--1150--4631Chr01:33004066..33004090 (25 bp)
GCGTACTTTCCCAAGGACTCTAGAA
LOC_Os01g56640
Os.10599.1.S1_x_at--781--9531Chr01:33004048..33004072 (25 bp)
TCTAGAAGCTCTTGTCCTCAACATG
LOC_Os01g56640
Os.10599.1.S1_x_at--103--4671Chr01:33003839..33003863 (25 bp)
GCGTGTTTGATGACCAGTATGCTGC
LOC_Os01g56640
Os.10599.1.S1_x_at--153--631Chr01:33003821..33003845 (25 bp)
ATGCTGCGATGGATGCACTTCTTAA
LOC_Os01g56640
Os.10599.1.S1_x_at--839--2951Chr01:33003428..33003811 (25 bp)
AATGTTTTCCTTTCAGGTATTCCAG
LOC_Os01g56640
Os.10599.1.S1_x_at--553--10211Chr01:33003411..33003435 (25 bp)
TATTCCAGAGTGTGCTGCGCCAATA
LOC_Os01g56640
Target Sequence 
ATCCTGAGCAGGTGTCCTGAGCAATTGAAGCAGAAGCAGGTTAATTCTGATTCATCTGACAAAAAAGATTCACCACTGCA
AACTCTGGAACCGTCCACCCTCCAAGCACTTTATGAACTCATCTCACTGGTTCACAACAGTGCTGAAATGGTTAGCCAAA
ACGAAATAACAGAACCTACATCTCAGGATGCATATTGCAAGCAAAGCAATGGAAGTAAGAAGATTGCTGCAGATGATTCA
TCTCTCTTGGAGAAAGATCCTATTGCAAAAATAATTTTACCACTCAAACCGCTTGAATTGCAGAGTATGCTGCTTGCCAT
GGCGCGTACTTTCCCAAGGACTCTAGAAGCTCTTGTCCTCAACATGCTTGGACCAATAGGAGCAGAGATACTGACAAGGA
AGTTTGACGAGATGGACCAACAAGCGACAAAAGAGCAACAGAGTGAGTTTTACAAGACATTCTACAGCGTGTTTGATGAC
CAGTATGCTGCGATGGATGCACTTCTTAATGGAAAAGAAATGTTTTCCTTTCAGGTATTCCAGAGTGTGCTGCGCCAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10599.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis