Browse Element(s) Details


OsAffx.21592.2.S1_at

Description tigr:9629.m05542
TID=OsAffx.21592.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to 78996-83414
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5662011/11tRNA pseudouridine synthase D family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g56590Os.23676.1.S1_at11/111+32951018..32973887HEAT repeat family protein, expressed
LOC_Os01g56600Os.11758.1.S1_at11/111+32979330..32983443Signal recognition particle 54 kDa protein 2, putative, expressed
LOC_Os01g56610Os.32439.1.S1_at11/111+32983604..32985329Homocysteine S-methyltransferase 4, putative, expressed
LOC_Os01g56620OsAffx.21592.2.S1_at11/111+32987548..32994030tRNA pseudouridine synthase D family protein, expressed
LOC_Os01g56620OsAffx.21592.1.S1_x_at6/111+32987548..32994030tRNA pseudouridine synthase D family protein, expressed
LOC_Os01g56620Os.49125.1.S1_s_at1/111+32987548..32994030tRNA pseudouridine synthase D family protein, expressed
LOC_Os01g56630Os.11030.1.S1_at11/111+32996390..33003255Dymeclin, putative, expressed
LOC_Os01g56630Os.11030.2.S1_x_at11/111+32996390..33003255Dymeclin, putative, expressed
LOC_Os01g56640Os.46124.1.S1_at11/111+33002828..33008255transcription factor jumonji, putative, expressed
LOC_Os01g56640Os.52837.1.S1_at11/111+33002828..33008255transcription factor jumonji, putative, expressed
LOC_Os01g56640Os.52837.1.S1_x_at11/111+33002828..33008255transcription factor jumonji, putative, expressed
LOC_Os01g56640Os.10599.1.S1_x_at10/111+33002828..33008255transcription factor jumonji, putative, expressed
LOC_Os01g56650OsAffx.9407.1.S1_at11/111+33009831..33010235hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21592.2.S1_at--709--4331Chr01:32989196..32989331 (25 bp)
CCAGTCTGTCAAGATAGCGGATTCT
LOC_Os01g56620
OsAffx.21592.2.S1_at--1121--7071Chr01:32989189..32989209 (21 bp)
GTCAAGATAGCGGATTCTGAAGATT
LOC_Os01g56620
OsAffx.21592.2.S1_at--485--8991Chr01:32989172..32989196 (25 bp)
TGAAGATTTATCAAAGTCCCTGTAC
LOC_Os01g56620
OsAffx.21592.2.S1_at--968--6531Chr01:32989168..32989192 (25 bp)
GATTTATCAAAGTCCCTGTACACAT
LOC_Os01g56620
OsAffx.21592.2.S1_at--374--2851Chr01:32989159..32989183 (25 bp)
AAGTCCCTGTACACATTTGAGGATG
LOC_Os01g56620
OsAffx.21592.2.S1_at--155--10271Chr01:32989144..32989168 (25 bp)
TTTGAGGATGTAGTCCTCCCTTTGC
LOC_Os01g56620
OsAffx.21592.2.S1_at--845--8751Chr01:32989140..32989160 (21 bp)
TGTAGTCCTCCCTTTGCCTGGTTCA
LOC_Os01g56620
OsAffx.21592.2.S1_at--889--9171Chr01:32989051..32989146 (25 bp)
TGCCTGGTTCAGAAACATTGTTTCC
LOC_Os01g56620
OsAffx.21592.2.S1_at--749--5531Chr01:32989040..32989064 (25 bp)
GAAACATTGTTTCCTGGGAACGAAG
LOC_Os01g56620
OsAffx.21592.2.S1_at--990--8751Chr01:32989033..32989057 (25 bp)
TGTTTCCTGGGAACGAAGTTGCTGG
LOC_Os01g56620
OsAffx.21592.2.S1_at--251--4111Chr01:32989020..32989044 (25 bp)
CGAAGTTGCTGGAATTTATCATGAA
LOC_Os01g56620
Target Sequence 
CCAGTCTGTCAAGATAGCGGATTCTGAAGATTTATCAAAGTCCCTGTACACATTTGAGGATGTAGTCCTCCCTTTGCCTG
GTTCAGAAACATTGTTTCCTGGGAACGAAGTTGCTGGAATTTATCATGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21592.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis