Browse Element(s) Details


Os.11030.2.S1_x_at

Description gb:NM_191439.1
DB_XREF= gi:34909961
GEN=P0695H10.17
TID=Os.11030.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.11030 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0695H10.17 (P0695H10.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0695H10.17 (P0695H10.17), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5663011/11Dymeclin, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g56590Os.23676.1.S1_at11/111+32951018..32973887HEAT repeat family protein, expressed
LOC_Os01g56600Os.11758.1.S1_at11/111+32979330..32983443Signal recognition particle 54 kDa protein 2, putative, expressed
LOC_Os01g56610Os.32439.1.S1_at11/111+32983604..32985329Homocysteine S-methyltransferase 4, putative, expressed
LOC_Os01g56620OsAffx.21592.2.S1_at11/111+32987548..32994030tRNA pseudouridine synthase D family protein, expressed
LOC_Os01g56620OsAffx.21592.1.S1_x_at6/111+32987548..32994030tRNA pseudouridine synthase D family protein, expressed
LOC_Os01g56620Os.49125.1.S1_s_at1/111+32987548..32994030tRNA pseudouridine synthase D family protein, expressed
LOC_Os01g56630Os.11030.1.S1_at11/111+32996390..33003255Dymeclin, putative, expressed
LOC_Os01g56630Os.11030.2.S1_x_at11/111+32996390..33003255Dymeclin, putative, expressed
LOC_Os01g56640Os.46124.1.S1_at11/111+33002828..33008255transcription factor jumonji, putative, expressed
LOC_Os01g56640Os.52837.1.S1_at11/111+33002828..33008255transcription factor jumonji, putative, expressed
LOC_Os01g56640Os.52837.1.S1_x_at11/111+33002828..33008255transcription factor jumonji, putative, expressed
LOC_Os01g56640Os.10599.1.S1_x_at10/111+33002828..33008255transcription factor jumonji, putative, expressed
LOC_Os01g56650OsAffx.9407.1.S1_at11/111+33009831..33010235hypothetical protein
LOC_Os01g56660OsAffx.21591.1.S1_at11/111+33020608..33023334hypothetical protein
LOC_Os01g56670Os.17630.1.S1_s_at11/111+33025872..33036119Glycosyl hydrolase family 47 protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11030.2.S1_x_at--1072--6551Chr01:32999964..32999988 (25 bp)
GATTCAACCTTCAATGCTAGTGTAC
LOC_Os01g56630
Os.11030.2.S1_x_at--343--2191Chr01:32999987..33000080 (25 bp)
ACACAAATTGGTGCTTCCGAGCGTC
LOC_Os01g56630
Os.11030.2.S1_x_at--39--1671Chr01:33000094..33000118 (25 bp)
AGCGCCTTATGCATCAAACTTCTTT
LOC_Os01g56630
Os.11030.2.S1_x_at--481--2211Chr01:33000160..33000645 (25 bp)
ACAACCTCTCCAAACTGCGAATTGA
LOC_Os01g56630
Os.11030.2.S1_x_at--837--6471Chr01:33000665..33000762 (25 bp)
GATACGTCCACAGAACTTCACATCT
LOC_Os01g56630
Os.11030.2.S1_x_at--787--3651Chr01:33000753..33000777 (25 bp)
CTTCACATCTATACCGACTTCTTAA
LOC_Os01g56630
Os.11030.2.S1_x_at--289--251Chr01:33000812..33000836 (25 bp)
ATATGCATTGCCTAGAAATCCTGAG
LOC_Os01g56630
Os.11030.2.S1_x_at--971--3031Chr01:33000828..33000930 (25 bp)
AATCCTGAGGTCGTGTATGCTATCT
LOC_Os01g56630
Os.11030.2.S1_x_at--54--2371Chr01:33000962..33000986 (25 bp)
AAACCATCCCCGCTTCAATGAATTG
LOC_Os01g56630
Os.11030.2.S1_x_at--65--2431Chr01:33001197..33001221 (25 bp)
AAAACTGCCGTTCATGGCGTGGAGA
LOC_Os01g56630
Os.11030.2.S1_x_at--579--10431Chr01:33001427..33001451 (25 bp)
TTATCCCATATGCATGGCGCGTTGT
LOC_Os01g56630
Target Sequence 
GATTCAACCTTCAATGCTAGTGTACACAAATTGGTGCTTCCGAGCGTCCCTTGGTACCATGAGCGCCTTATGCATCAAAC
TTCTTTGGGATCTTTGATGGTTGTTATACTAATCCGAACCATCAAATACAACCTCTCCAAACTGCGAATTGAAGCAGACA
ACATCTCAGATGATACGTCCACAGAACTTCACATCTATACCGACTTCTTAAGAATTGTTCTAGAAATCATCAATGCAATT
CTTACATATGCATTGCCTAGAAATCCTGAGGTCGTGTATGCTATCTTGCATCGACAAGAGGTATTTCAGCCATTCAAAAA
CCATCCCCGCTTCAATGAATTGCTTGAGAATATTTACACAGTGTTGGATTTCTTCAATAGTCGAATGGACATGCAGCAGT
TAGATGGAGAATGGTCTGTAGATAAGGTTCTTGAGGTTATTAACAAAAACTGCCGTTCATGGCGTGGAGAAGGAATGAAG
ATGTTTACCCAGTTACGGTTTACATATGAGCAAGAAAGTCATCCTGAGGAGTTTTTTATCCCATATGCATGGCGCGTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11030.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis