Browse Element(s) Details


OsAffx.14675.1.S1_at

Description tigr:9633.m01193
TID=OsAffx.14675.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1376011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g13730Os.40360.1.S1_at5/115+7582697..7588472Zinc knuckle family protein
LOC_Os05g13730Os.40855.5.S1_x_at4/115+7582697..7588472Zinc knuckle family protein
LOC_Os05g13730Os.40360.1.S1_x_at3/115+7582697..7588472Zinc knuckle family protein
LOC_Os05g13730Os.2358.1.S1_at2/115+7582697..7588472Zinc knuckle family protein
LOC_Os05g13740NANA5+7591628..7595475retrotransposon protein, putative, unclassified
LOC_Os05g13750OsAffx.31069.2.S1_x_at1/115+7599334..7602194retrotransposon protein, putative, unclassified
LOC_Os05g13760OsAffx.14675.1.S1_at11/115+7605086..7606135hypothetical protein
LOC_Os05g13770OsAffx.4329.1.S1_at11/115+7609492..7613200RNA polymerase Rpb7, N-terminal domain containing protein
LOC_Os05g13780OsAffx.14676.1.S1_x_at11/115+7613502..7619875chromomethylase 2, putative, expressed
LOC_Os05g13780Os.19124.1.S1_at11/115+7613502..7619875chromomethylase 2, putative, expressed
LOC_Os05g13790Os.23798.1.S1_at11/115+7625300..7627505expressed protein
LOC_Os05g13800OsAffx.17848.4.S1_at11/115+7628721..7635029transposon protein, putative, Mutator sub-class, expressed
LOC_Os05g13800OsAffx.17848.4.S1_x_at11/115+7628721..7635029transposon protein, putative, Mutator sub-class, expressed
LOC_Os05g13800Os.54363.1.S1_at6/115+7628721..7635029transposon protein, putative, Mutator sub-class, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14675.1.S1_at--841--9431Chr05:7606034..7606058 (25 bp)
TCGGATTGATCTCCAACTCAGGTCA
LOC_Os05g13760
OsAffx.14675.1.S1_at--779--10771Chr05:7606029..7606053 (25 bp)
TTGATCTCCAACTCAGGTCACACGG
LOC_Os05g13760
OsAffx.14675.1.S1_at--1142--1011Chr05:7606015..7606039 (25 bp)
AGGTCACACGGCCAGGCCAGGTCAT
LOC_Os05g13760
OsAffx.14675.1.S1_at--206--4431Chr05:7606000..7606024 (25 bp)
GCCAGGTCATACGTGCGTCATGAAG
LOC_Os05g13760
OsAffx.14675.1.S1_at--161--3571Chr05:7605993..7606017 (25 bp)
CATACGTGCGTCATGAAGTGGCGAG
LOC_Os05g13760
OsAffx.14675.1.S1_at--225--1071Chr05:7605949..7605973 (25 bp)
AGGGATGGATATACCTTCGGCTCCG
LOC_Os05g13760
OsAffx.14675.1.S1_at--864--291Chr05:7605939..7605963 (25 bp)
ATACCTTCGGCTCCGATTCGAACGG
LOC_Os05g13760
OsAffx.14675.1.S1_at--656--4011Chr05:7605931..7605950 (20 bp)
CGATTCGAACGGAGACGGAGCGAAC
LOC_Os05g13760
OsAffx.14675.1.S1_at--1121--5071Chr05:7605259..7605283 (25 bp)
GCACCGGTGCTAGTGCCGGCAATGC
LOC_Os05g13760
OsAffx.14675.1.S1_at--386--10071Chr05:7605249..7605273 (25 bp)
TAGTGCCGGCAATGCGCGGTATGAC
LOC_Os05g13760
OsAffx.14675.1.S1_at--368--3031Chr05:7605239..7605263 (25 bp)
AATGCGCGGTATGACCAACAGTGGC
LOC_Os05g13760
Target Sequence 
TCGGATTGATCTCCAACTCAGGTCACACGGCCAGGCCAGGTCATACGTGCGTCATGAAGTGGCGAGGAGGAAGAGGGAGA
GAAGAAGGGATGGATATACCTTCGGCTCCGATTCGAACGGAGACGGAGCGAACGGCAGCGTGCGGGTTGAGCGATGGGCA
CCGGTGCTAGTGCCGGCAATGCGCGGTATGACCAACAGTGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14675.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis