Browse Element(s) Details


OsAffx.14676.1.S1_x_at

Description tigr:9633.m01195
TID=OsAffx.14676.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to chromomethylase CMT2
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1378011/11chromomethylase 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g13740NANA5+7591628..7595475retrotransposon protein, putative, unclassified
LOC_Os05g13750OsAffx.31069.2.S1_x_at1/115+7599334..7602194retrotransposon protein, putative, unclassified
LOC_Os05g13760OsAffx.14675.1.S1_at11/115+7605086..7606135hypothetical protein
LOC_Os05g13770OsAffx.4329.1.S1_at11/115+7609492..7613200RNA polymerase Rpb7, N-terminal domain containing protein
LOC_Os05g13780OsAffx.14676.1.S1_x_at11/115+7613502..7619875chromomethylase 2, putative, expressed
LOC_Os05g13780Os.19124.1.S1_at11/115+7613502..7619875chromomethylase 2, putative, expressed
LOC_Os05g13790Os.23798.1.S1_at11/115+7625300..7627505expressed protein
LOC_Os05g13800OsAffx.17848.4.S1_at11/115+7628721..7635029transposon protein, putative, Mutator sub-class, expressed
LOC_Os05g13800OsAffx.17848.4.S1_x_at11/115+7628721..7635029transposon protein, putative, Mutator sub-class, expressed
LOC_Os05g13800Os.54363.1.S1_at6/115+7628721..7635029transposon protein, putative, Mutator sub-class, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006306biological_processDNA methylation
GO:0006342biological_processchromatin silencing
GO:0045814biological_processnegative regulation of gene expression, epigenetic
GO:0003677molecular_functionDNA binding
GO:0003886molecular_functionDNA (cytosine-5-)-methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14676.1.S1_x_at--817--811Chr05:7615992..7616016 (25 bp)
ATGGTCCCAGAGCTCATGTTACAAA
LOC_Os05g13780
OsAffx.14676.1.S1_x_at--663--2771Chr05:7615726..7615750 (25 bp)
AAGAGTACTTTTGCCATCTGGTCGT
LOC_Os05g13780
OsAffx.14676.1.S1_x_at--340--9411Chr05:7615596..7615729 (25 bp)
TCGTCCTCTGGTGCTTGATTGCATA
LOC_Os05g13780
OsAffx.14676.1.S1_x_at--657--7311Chr05:7615407..7615431 (25 bp)
GTGCTGACAGTTCCAAATGCCCGTA
LOC_Os05g13780
OsAffx.14676.1.S1_x_at--937--2271Chr05:7615319..7615417 (25 bp)
AAATGCCCGTATGCAGGCCTTGATA
LOC_Os05g13780
OsAffx.14676.1.S1_x_at--228--5651Chr05:7615282..7615306 (25 bp)
GACAGACTGCTTACTATTCGTGAAA
LOC_Os05g13780
OsAffx.14676.1.S1_x_at--958--2291Chr05:7615260..7615284 (25 bp)
AAAGTGCTCGGTTGCAAGGCTTTCC
LOC_Os05g13780
OsAffx.14676.1.S1_x_at--860--3011Chr05:7614118..7614142 (25 bp)
AATGCGGTGGCCGTACCTGTTGGAC
LOC_Os05g13780
OsAffx.14676.1.S1_x_at--804--10851Chr05:7614099..7614123 (25 bp)
TTGGACGAGCACTTGGATACGCCCT
LOC_Os05g13780
OsAffx.14676.1.S1_x_at--533--8371Chr05:7614074..7614098 (25 bp)
GGCGATGGCCTACCTGAAGAAGTCT
LOC_Os05g13780
OsAffx.14676.1.S1_x_at--301--5331Chr05:7614056..7614080 (25 bp)
GAAGTCTGGAGACGATCCCCTTATG
LOC_Os05g13780
Target Sequence 
ATGGTCCCAGAGCTCATGTTACAAAAGATTCCAAATCCTCAAAATTGTATGATCATCGACCATTGGTACTGGATAATGAT
AACTACCAAAGGATATTGCAAATTCCCAAGAGAAAGGGAGCTAATTTTAGAGACCTTTCAGGAGTCATAGTTGGTCCTGA
CAATGTGGCTAGATTAGATCCAACGAAAGAAAGAGTACTTTTGCCATCTGGTCGTCCTCTGGTGCTTGATTGCATACTAG
CTTATGAGAATGGTAAATCTTTAAGACCTTTTGGTCGAGTATGGTGGGATGAGGTAGTGGGAACCGTGCTGACAGTTCCA
AATGCCCGTATGCAGGCCTTGATACATCCTGCACAAGACAGACTGCTTACTATTCGTGAAAGTGCTCGGTTGCAAGGCTT
TCCTGACAATTACAGGTTTCGTGGAACAGTCAAAGACAGGTATCGCCAGATTGGAAATGCGGTGGCCGTACCTGTTGGAC
GAGCACTTGGATACGCCCTGGCGATGGCCTACCTGAAGAAGTCTGGAGACGATCCCCTTATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14676.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis