Browse Element(s) Details


Os.18728.1.S1_at

Description gb:AK101567.1
DB_XREF= gi:32986776
TID=Os.18728.1
CNT=18
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.18728 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0560B06.2 (P0560B06.2), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033050F16, full insert sequence.
FL= gb:AK073559.1 gb:AK101567.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2694011/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g2684011/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g26916Os.35344.3.S1_x_at9/111+15308969..15311664Transposable element protein, putative, MuDR
LOC_Os01g26916Os.35344.18.S1_x_at9/111+15308969..15311664Transposable element protein, putative, MuDR
LOC_Os01g26916OsAffx.22940.5.S1_x_at3/111+15308969..15311664Transposable element protein, putative, MuDR
LOC_Os01g26920Os.12845.1.S1_at5/111+15320356..15324971expressed protein
LOC_Os01g26920Os.34167.2.S1_x_at1/111+15320356..15324971expressed protein
LOC_Os01g26930OsAffx.8908.1.S1_at11/111+15327347..15331899transposon protein, putative, Mutator sub-class
LOC_Os01g26930OsAffx.8908.1.S1_x_at11/111+15327347..15331899transposon protein, putative, Mutator sub-class
LOC_Os01g26930OsAffx.19407.1.S1_at1/111+15327347..15331899transposon protein, putative, Mutator sub-class
LOC_Os01g26940Os.18728.1.S1_at11/111+15333878..15340141transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g26940Os.18728.2.S1_x_at11/111+15333878..15340141transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g26950OsAffx.11217.1.S1_at11/111+15341578..15341850hypothetical protein
LOC_Os01g26960OsAffx.11218.1.S1_at11/111+15344972..15345250hypothetical protein
LOC_Os01g26970Os.34167.1.S1_at11/111+15346680..15350792expressed protein
LOC_Os01g26970Os.34167.2.S1_x_at10/111+15346680..15350792expressed protein
LOC_Os01g26970Os.34167.3.S1_x_at10/111+15346680..15350792expressed protein
LOC_Os01g26970Os.34167.2.S1_at9/111+15346680..15350792expressed protein
LOC_Os01g26980OsAffx.17848.1.S1_x_at11/111+15352704..15363122Transposable element protein, putative, MuDR
LOC_Os01g26980OsAffx.17848.1.S1_at11/111+15352704..15363122Transposable element protein, putative, MuDR
LOC_Os01g26980OsAffx.17848.4.S1_x_at7/111+15352704..15363122Transposable element protein, putative, MuDR
LOC_Os01g26980OsAffx.17848.5.S1_x_at7/111+15352704..15363122Transposable element protein, putative, MuDR
LOC_Os01g26980OsAffx.17848.2.S1_x_at3/111+15352704..15363122Transposable element protein, putative, MuDR
LOC_Os01g26980Os.54363.1.S1_at2/111+15352704..15363122Transposable element protein, putative, MuDR
LOC_Os01g26980OsAffx.17848.4.S1_at2/111+15352704..15363122Transposable element protein, putative, MuDR
LOC_Os01g26980OsAffx.17848.3.S1_x_at2/111+15352704..15363122Transposable element protein, putative, MuDR
LOC_Os01g26980OsAffx.11160.1.S1_s_at1/111+15352704..15363122Transposable element protein, putative, MuDR

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18728.1.S1_at--886--10092Chr01:15334420..15334444 (25 bp)
TATGGCAAACTCACCAGCTATTGAT
LOC_Os01g26940
Os.18728.1.S1_at--1121--352Chr01:15334374..15334398 (25 bp)
ATAATGCACTTCCTATGGCTACCTT
LOC_Os01g26940
Os.18728.1.S1_at--28--6292Chr01:15334328..15334352 (25 bp)
GATGTTATGTCACACCTTAGCTTGT
LOC_Os01g26940
Os.18728.1.S1_at--1106--5152Chr01:15334255..15334279 (25 bp)
GCAACCTCTGCGCACAAGATGTTAT
LOC_Os01g26940
Os.18728.1.S1_at--539--6272Chr01:15334238..15334262 (25 bp)
GATGTTATGCCCTGCCAGATATGCA
LOC_Os01g26940
Os.18728.1.S1_at--1076--7492Chr01:15334167..15334191 (25 bp)
GTGGTTAAGCTCCACTGCATTAAGG
LOC_Os01g26940
Os.18728.1.S1_at--383--7392Chr01:15334120..15334144 (25 bp)
GTGAGGCTCTGATACTAAACCGTCT
LOC_Os01g26940
Os.18728.1.S1_at--507--9832Chr01:15334105..15334129 (25 bp)
TAAACCGTCTAGTTGACCTTCCAAT
LOC_Os01g26940
Os.18728.1.S1_at--610--6572Chr01:15333981..15334005 (25 bp)
GATTCTAGTTACTCCGTGCTTGATA
LOC_Os01g26940
Os.18728.1.S1_at--853--3672Chr01:15333932..15333956 (25 bp)
CTTTTTGCTCGTTATGTTATCCTGT
LOC_Os01g26940
Os.18728.1.S1_at--568--6792Chr01:15333917..15333941 (25 bp)
GTTATCCTGTATGTTACCTTCCATT
LOC_Os01g26940
Target Sequence 
TATGGCAAACTCACCAGCTATTGATGGTATATTAGGAGTAAGAGTCATAATGCACTTCCTATGGCTACCTTGCTGACAAT
TACAACGAATAAGATGTTATGTCACACCTTAGCTTGTTTCAGGGCCCTGCTGCTGATAAGAGGGAATTAATACCTTTTAA
TGTCTGCAACCTCTGCGCACAAGATGTTATGCCCTGCCAGATATGCACGAGGCGTTCATCCTCTTCCTCATGGTCACCAG
CTGACCTGGCCAAGTGGTTAAGCTCCACTGCATTAAGGGGCATGAATGGAATTCAGATCTGTGAGGCTCTGATACTAAAC
CGTCTAGTTGACCTTCCAATAATTTATAGCAATGTAGGTTCCAATCATCATGTTTATATTTGCACCTTTGNGAGGTAAAA
GATGGCATCTTTCTTTCTTCACTGTAGTTTGTGGTTTTGGATTCTAGTTACTCCGTGCTTGATAATGGATATAGCCAACT
TGTATTTTCTTTTTGCTCGTTATGTTATCCTGTATGTTACCTTCCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18728.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis